* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spMC’ ...
** package ‘spMC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoWiHiQ/R.INSTALL4f39a68a701cd/spMC/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c spMC.c -o spMC.o
In file included from /usr/include/string.h:548,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R_ext/RS.h:34,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R.h:78,
                 from spMC.h:12,
                 from spMC.c:2:
In function ‘memcpy’,
    inlined from ‘expmat’ at spMC.c:870:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘x2’ may be used uninitialized [-Wmaybe-uninitialized]
   29 |   return __builtin___memcpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   30 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
<built-in>: In function ‘expmat’:
<built-in>: note: by argument 2 of type ‘const void *’ to ‘__builtin___memcpy_chk’ declared here
In function ‘memcpy’,
    inlined from ‘expmat’ at spMC.c:870:7:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘x2’ may be used uninitialized [-Wmaybe-uninitialized]
<built-in>: In function ‘expmat’:
<built-in>: note: by argument 2 of type ‘const void *’ to ‘__builtin___memcpy_chk’ declared here
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spMC.so spMC.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoWiHiQ/R.INSTALL4f39a68a701cd/spMC/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpoWiHiQ/R.INSTALL4f39a68a701cd/spMC/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpoWiHiQ/R.INSTALL4f39a68a701cd/spMC/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spMC/00new/spMC/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘spMC’
    finding HTML links ... done
    ACM                                     html  
    boxplot.lengths                         html  
    contour.pemt                            html  
    density.lengths                         html  
    embed_MC                                html  
    getlen                                  html  
    hist.lengths                            html  
    image.multi_tpfit                       html  
    image.pemt                              html  
    is.lengths                              html  
    is.multi_tpfit                          html  
    is.multi_transiogram                    html  
    is.pemt                                 html  
    is.tpfit                                html  
    is.transiogram                          html  
    mixplot                                 html  
    mlen                                    html  
    multi_tpfit                             html  
    multi_tpfit_ils                         html  
    multi_tpfit_me                          html  
    multi_tpfit_ml                          html  
    pemt                                    html  
    persp.multi_tpfit                       html  
    persp.pemt                              html  
    plot.density.lengths                    html  
    plot.hist.lengths                       html  
    plot.lengths                            html  
    plot.transiogram                        html  
    predict.multi_tpfit                     html  
    predict.tpfit                           html  
    print.density.lengths                   html  
    print.lengths                           html  
    print.multi_tpfit                       html  
    print.multi_transiogram                 html  
    print.summary.lengths                   html  
    print.tpfit                             html  
    print.transiogram                       html  
    quench                                  html  
    setCores                                html  
    sim                                     html  
    sim_ck                                  html  
    sim_ik                                  html  
    sim_mcs                                 html  
    sim_path                                html  
    spMC-package                            html  
    summary.lengths                         html  
    tpfit                                   html  
    tpfit_ils                               html  
    tpfit_me                                html  
    tpfit_ml                                html  
    transiogram                             html  
    which_lines                             html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spMC)