* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘spAbundance’ ...
** package ‘spAbundance’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkVQFdt/R.INSTALLd268738af8a33/spAbundance/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c DS.cpp -o DS.o
DS.cpp: In function ‘SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
DS.cpp:774:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
774 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:204:10: note: ‘sigmaSqPSamples_r’ was declared here
204 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:776:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
776 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:205:10: note: ‘alphaStarSamples_r’ was declared here
205 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:768:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
768 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
DS.cpp:213:10: note: ‘sigmaSqMuSamples_r’ was declared here
213 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
DS.cpp:770:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
770 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
DS.cpp:214:10: note: ‘betaStarSamples_r’ was declared here
214 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
DS.cpp:868:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
868 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
DS.cpp:236:12: note: ‘tmp_0’ was declared here
236 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix.cpp -o NMix.o
NMix.cpp: In function ‘SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
NMix.cpp:616:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
616 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:201:10: note: ‘sigmaSqPSamples_r’ was declared here
201 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:618:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
618 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:202:10: note: ‘alphaStarSamples_r’ was declared here
202 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:610:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
610 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
NMix.cpp:210:10: note: ‘sigmaSqMuSamples_r’ was declared here
210 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
NMix.cpp:612:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
612 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
NMix.cpp:211:10: note: ‘betaStarSamples_r’ was declared here
211 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
NMix.cpp:708:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
708 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
NMix.cpp:222:12: note: ‘tmp_0’ was declared here
222 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c abund.cpp -o abund.o
abund.cpp: In function ‘SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
abund.cpp:411:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
411 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abund.cpp:169:10: note: ‘sigmaSqMuSamples_r’ was declared here
169 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abund.cpp:413:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
413 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abund.cpp:170:10: note: ‘betaStarSamples_r’ was declared here
170 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c abundGaussian.cpp -o abundGaussian.o
abundGaussian.cpp: In function ‘SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
abundGaussian.cpp:371:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
371 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:164:10: note: ‘sigmaSqMuSamples_r’ was declared here
164 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
abundGaussian.cpp:373:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
373 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
abundGaussian.cpp:165:10: note: ‘betaStarSamples_r’ was declared here
165 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkAlphaDS.cpp -o checkAlphaDS.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c idist.cpp -o idist.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsAbund.cpp -o lfMsAbund.o
lfMsAbund.cpp: In function ‘SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsAbund.cpp:721:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
721 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:220:10: note: ‘sigmaSqMuSamples_r’ was declared here
220 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:722:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
722 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:221:10: note: ‘betaStarSamples_r’ was declared here
221 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsAbund.cpp:807:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
807 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsAbund.cpp:229:10: note: ‘kappaSamples_r’ was declared here
229 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o
lfMsAbundGaussian.cpp: In function ‘SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsAbundGaussian.cpp:680:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
680 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:244:10: note: ‘sigmaSqMuSamples_r’ was declared here
244 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:681:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
681 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsAbundGaussian.cpp:245:10: note: ‘betaStarSamples_r’ was declared here
245 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsDS.cpp -o lfMsDS.o
lfMsDS.cpp: In function ‘SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsDS.cpp:1153:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1153 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:278:10: note: ‘sigmaSqPSamples_r’ was declared here
278 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1154:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1154 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:279:10: note: ‘alphaStarSamples_r’ was declared here
279 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1157:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1157 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:287:10: note: ‘sigmaSqMuSamples_r’ was declared here
287 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsDS.cpp:1158:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1158 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:288:10: note: ‘betaStarSamples_r’ was declared here
288 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsDS.cpp:1260:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1260 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsDS.cpp:295:10: note: ‘kappaSamples_r’ was declared here
295 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsDS.cpp:1256:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1256 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsDS.cpp:186:12: note: ‘tmp_0’ was declared here
186 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsNMix.cpp -o lfMsNMix.o
lfMsNMix.cpp: In function ‘SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
lfMsNMix.cpp:1014:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1014 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:271:10: note: ‘sigmaSqPSamples_r’ was declared here
271 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1015:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1015 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:272:10: note: ‘alphaStarSamples_r’ was declared here
272 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1018:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1018 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:280:10: note: ‘sigmaSqMuSamples_r’ was declared here
280 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1019:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1019 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:281:10: note: ‘betaStarSamples_r’ was declared here
281 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
lfMsNMix.cpp:1116:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1116 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
lfMsNMix.cpp:288:10: note: ‘kappaSamples_r’ was declared here
288 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
lfMsNMix.cpp:1112:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1112 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
lfMsNMix.cpp:179:12: note: ‘tmp_0’ was declared here
179 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mkSpCov.cpp -o mkSpCov.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msAbund.cpp -o msAbund.o
msAbund.cpp: In function ‘SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msAbund.cpp:527:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
527 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbund.cpp:200:10: note: ‘sigmaSqMuSamples_r’ was declared here
200 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbund.cpp:528:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
528 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbund.cpp:201:10: note: ‘betaStarSamples_r’ was declared here
201 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msAbund.cpp:611:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
611 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msAbund.cpp:209:10: note: ‘kappaSamples_r’ was declared here
209 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msAbundGaussian.cpp -o msAbundGaussian.o
msAbundGaussian.cpp: In function ‘SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msAbundGaussian.cpp:500:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
500 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:218:10: note: ‘sigmaSqMuSamples_r’ was declared here
218 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:501:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
501 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msAbundGaussian.cpp:219:10: note: ‘betaStarSamples_r’ was declared here
219 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msDS.cpp -o msDS.o
msDS.cpp: In function ‘SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msDS.cpp:967:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
967 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:259:10: note: ‘sigmaSqPSamples_r’ was declared here
259 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:968:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
968 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:260:10: note: ‘alphaStarSamples_r’ was declared here
260 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:971:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
971 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msDS.cpp:268:10: note: ‘sigmaSqMuSamples_r’ was declared here
268 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msDS.cpp:972:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
972 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msDS.cpp:269:10: note: ‘betaStarSamples_r’ was declared here
269 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msDS.cpp:1072:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1072 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msDS.cpp:276:10: note: ‘kappaSamples_r’ was declared here
276 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msDS.cpp:1068:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1068 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msDS.cpp:180:12: note: ‘tmp_0’ was declared here
180 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msNMix.cpp -o msNMix.o
msNMix.cpp: In function ‘SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
msNMix.cpp:840:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
840 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:253:10: note: ‘sigmaSqPSamples_r’ was declared here
253 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:841:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
841 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:254:10: note: ‘alphaStarSamples_r’ was declared here
254 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:844:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
844 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
msNMix.cpp:262:10: note: ‘sigmaSqMuSamples_r’ was declared here
262 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
msNMix.cpp:845:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
845 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
msNMix.cpp:263:10: note: ‘betaStarSamples_r’ was declared here
263 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
msNMix.cpp:940:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
940 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
msNMix.cpp:270:10: note: ‘kappaSamples_r’ was declared here
270 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
msNMix.cpp:936:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
936 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
msNMix.cpp:174:12: note: ‘tmp_0’ was declared here
174 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nn.cpp -o nn.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rpg.cpp -o rpg.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o
sfMsAbundGaussianNNGP.cpp: In function ‘SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsAbundGaussianNNGP.cpp:943:53: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
943 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:301:10: note: ‘yRepSamples_r’ was declared here
301 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:942:51: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
942 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:302:10: note: ‘muSamples_r’ was declared here
302 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:944:53: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
944 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc);
| ~~~~^~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:303:10: note: ‘likeSamples_r’ was declared here
303 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:949:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
949 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:320:10: note: ‘sigmaSqMuSamples_r’ was declared here
320 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:950:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
950 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsAbundGaussianNNGP.cpp:321:10: note: ‘betaStarSamples_r’ was declared here
321 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o
sfMsAbundNNGP.cpp: In function ‘SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsAbundNNGP.cpp:539:21: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
539 | SET_VECTOR_ELT(result_r, 3, yRepSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:269:10: note: ‘yRepSamples_r’ was declared here
269 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:540:21: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
540 | SET_VECTOR_ELT(result_r, 4, muSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:270:10: note: ‘muSamples_r’ was declared here
270 | SEXP muSamples_r;
| ^~~~~~~~~~~
sfMsAbundNNGP.cpp:541:21: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
541 | SET_VECTOR_ELT(result_r, 10, likeSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:271:10: note: ‘likeSamples_r’ was declared here
271 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
sfMsAbundNNGP.cpp:549:21: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
549 | SET_VECTOR_ELT(result_r, 11, sigmaSqMuSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:288:10: note: ‘sigmaSqMuSamples_r’ was declared here
288 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:550:21: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
550 | SET_VECTOR_ELT(result_r, 12, betaStarSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:289:10: note: ‘betaStarSamples_r’ was declared here
289 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:558:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
558 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsAbundNNGP.cpp:297:10: note: ‘kappaSamples_r’ was declared here
297 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o
sfMsDSNNGP.cpp: In function ‘SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsDSNNGP.cpp:1429:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1429 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:342:10: note: ‘sigmaSqPSamples_r’ was declared here
342 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1430:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1430 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:343:10: note: ‘alphaStarSamples_r’ was declared here
343 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1433:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1433 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:351:10: note: ‘sigmaSqMuSamples_r’ was declared here
351 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1434:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1434 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:352:10: note: ‘betaStarSamples_r’ was declared here
352 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1543:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1543 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsDSNNGP.cpp:359:10: note: ‘kappaSamples_r’ was declared here
359 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsDSNNGP.cpp:1539:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1539 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsDSNNGP.cpp:244:12: note: ‘tmp_0’ was declared here
244 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o
sfMsNMixNNGP.cpp: In function ‘SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
sfMsNMixNNGP.cpp:1290:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1290 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:336:10: note: ‘sigmaSqPSamples_r’ was declared here
336 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1291:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1291 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:337:10: note: ‘alphaStarSamples_r’ was declared here
337 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1294:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1294 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:345:10: note: ‘sigmaSqMuSamples_r’ was declared here
345 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1295:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1295 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:346:10: note: ‘betaStarSamples_r’ was declared here
346 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1399:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1399 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:353:10: note: ‘kappaSamples_r’ was declared here
353 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
sfMsNMixNNGP.cpp:1395:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1395 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
sfMsNMixNNGP.cpp:238:12: note: ‘tmp_0’ was declared here
238 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o
spAbundGaussianNNGP.cpp: In function ‘SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spAbundGaussianNNGP.cpp:663:52: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
663 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:230:10: note: ‘yRepSamples_r’ was declared here
230 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:664:60: warning: ‘yRepZeroSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
664 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:231:10: note: ‘yRepZeroSamples_r’ was declared here
231 | SEXP yRepZeroSamples_r;
| ^~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:665:50: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
665 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:232:10: note: ‘muSamples_r’ was declared here
232 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundGaussianNNGP.cpp:667:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
667 | &REAL(likeSamples_r)[sPost*J], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:233:10: note: ‘likeSamples_r’ was declared here
233 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:671:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
671 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:248:10: note: ‘sigmaSqMuSamples_r’ was declared here
248 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:673:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
673 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundGaussianNNGP.cpp:249:10: note: ‘betaStarSamples_r’ was declared here
249 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundNNGP.cpp -o spAbundNNGP.o
spAbundNNGP.cpp: In function ‘SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spAbundNNGP.cpp:760:55: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
760 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:223:10: note: ‘yRepSamples_r’ was declared here
223 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:759:53: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
759 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
spAbundNNGP.cpp:224:10: note: ‘muSamples_r’ was declared here
224 | SEXP muSamples_r;
| ^~~~~~~~~~~
spAbundNNGP.cpp:762:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
762 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
spAbundNNGP.cpp:225:10: note: ‘likeSamples_r’ was declared here
225 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
spAbundNNGP.cpp:861:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
861 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:237:10: note: ‘kappaSamples_r’ was declared here
237 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spAbundNNGP.cpp:771:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
771 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:243:10: note: ‘sigmaSqMuSamples_r’ was declared here
243 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:773:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
773 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spAbundNNGP.cpp:244:10: note: ‘betaStarSamples_r’ was declared here
244 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spDSNNGP.cpp -o spDSNNGP.o
spDSNNGP.cpp: In function ‘SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spDSNNGP.cpp:1235:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1235 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:261:10: note: ‘kappaSamples_r’ was declared here
261 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spDSNNGP.cpp:1128:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1128 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:273:10: note: ‘sigmaSqPSamples_r’ was declared here
273 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1130:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1130 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:274:10: note: ‘alphaStarSamples_r’ was declared here
274 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1122:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1122 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:282:10: note: ‘sigmaSqMuSamples_r’ was declared here
282 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1124:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1124 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spDSNNGP.cpp:283:10: note: ‘betaStarSamples_r’ was declared here
283 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spDSNNGP.cpp:1231:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1231 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spDSNNGP.cpp:305:12: note: ‘tmp_0’ was declared here
305 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spNMixNNGP.cpp -o spNMixNNGP.o
spNMixNNGP.cpp: In function ‘SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
spNMixNNGP.cpp:1076:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1076 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:259:10: note: ‘kappaSamples_r’ was declared here
259 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
spNMixNNGP.cpp:976:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
976 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:271:10: note: ‘sigmaSqPSamples_r’ was declared here
271 | SEXP sigmaSqPSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:978:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
978 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:272:10: note: ‘alphaStarSamples_r’ was declared here
272 | SEXP alphaStarSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:970:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
970 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:280:10: note: ‘sigmaSqMuSamples_r’ was declared here
280 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:972:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
972 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:281:10: note: ‘betaStarSamples_r’ was declared here
281 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
spNMixNNGP.cpp:1072:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized]
1072 | tmp_02 = tmp_0 + 2;
| ~~~~~~~^~~~~~~~~~~
spNMixNNGP.cpp:292:12: note: ‘tmp_0’ was declared here
292 | double tmp_0, tmp_02;
| ^~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundGaussianNNGP.cpp -o svcAbundGaussianNNGP.o
svcAbundGaussianNNGP.cpp: In function ‘SEXPREC* svcAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svcAbundGaussianNNGP.cpp:712:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
712 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:244:10: note: ‘sigmaSqMuSamples_r’ was declared here
244 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:714:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
714 | &REAL(betaStarSamples_r)[sPost*nRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:245:10: note: ‘betaStarSamples_r’ was declared here
245 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
svcAbundGaussianNNGP.cpp:581:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized]
581 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet)
| ^~~
svcAbundGaussianNNGP.cpp:331:12: note: ‘logDet’ was declared here
331 | double logDet;
| ^~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundGaussianNNGPPredict.cpp -o svcAbundGaussianNNGPPredict.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundNNGP.cpp -o svcAbundNNGP.o
svcAbundNNGP.cpp: In function ‘SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svcAbundNNGP.cpp:796:55: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
796 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
svcAbundNNGP.cpp:226:10: note: ‘yRepSamples_r’ was declared here
226 | SEXP yRepSamples_r;
| ^~~~~~~~~~~~~
svcAbundNNGP.cpp:795:53: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
795 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~
svcAbundNNGP.cpp:227:10: note: ‘muSamples_r’ was declared here
227 | SEXP muSamples_r;
| ^~~~~~~~~~~
svcAbundNNGP.cpp:798:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
798 | &REAL(likeSamples_r)[sPost*nObs], &inc);
| ~~~~^~~~~~~~~~~~~~~
svcAbundNNGP.cpp:228:10: note: ‘likeSamples_r’ was declared here
228 | SEXP likeSamples_r;
| ^~~~~~~~~~~~~
svcAbundNNGP.cpp:896:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
896 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:240:10: note: ‘kappaSamples_r’ was declared here
240 | SEXP kappaSamples_r;
| ^~~~~~~~~~~~~~
svcAbundNNGP.cpp:807:36: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
807 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:246:10: note: ‘sigmaSqMuSamples_r’ was declared here
246 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:809:36: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
809 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcAbundNNGP.cpp:247:10: note: ‘betaStarSamples_r’ was declared here
247 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o
svcMsAbundGaussianNNGP.cpp: In function ‘SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
svcMsAbundGaussianNNGP.cpp:1031:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1031 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:321:10: note: ‘sigmaSqMuSamples_r’ was declared here
321 | SEXP sigmaSqMuSamples_r;
| ^~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:1032:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized]
1032 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc);
| ~~~~^~~~~~~~~~~~~~~~~~~
svcMsAbundGaussianNNGP.cpp:322:10: note: ‘betaStarSamples_r’ was declared here
322 | SEXP betaStarSamples_r;
| ^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c waicAbund.cpp -o waicAbund.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o spAbundance.so DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundGaussianNNGP.o svcAbundGaussianNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkVQFdt/R.INSTALLd268738af8a33/spAbundance/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkVQFdt/R.INSTALLd268738af8a33/spAbundance/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkVQFdt/R.INSTALLd268738af8a33/spAbundance/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-spAbundance/00new/spAbundance/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘spAbundance’
finding HTML links ... done
DS html
NMix html
abund html
bbsData.rda html
bbsPredData.rda html
dataNMixSim.rda html
fitted.DS html
fitted.NMix html
fitted.abund html
fitted.lfMsAbund html
fitted.lfMsDS html
fitted.lfMsNMix html
fitted.msAbund html
fitted.msDS html
fitted.msNMix html
fitted.sfMsAbund html
fitted.sfMsDS html
fitted.sfMsNMix html
fitted.spAbund html
fitted.spDS html
fitted.spNMix html
fitted.svcAbund html
fitted.svcMsAbund html
hbefCount2015.rda html
lfMsAbund html
lfMsDS html
lfMsNMix html
msAbund html
msDS html
msNMix html
neonDWP.rda html
neonPredData.rda html
ppcAbund html
predict.DS html
predict.NMix html
predict.abund html
predict.lfMsAbund html
predict.lfMsDS html
predict.lfMsNMix html
predict.msAbund html
predict.msDS html
predict.msNMix html
predict.sfMsAbund html
predict.sfMsDS html
predict.sfMsNMix html
predict.spAbund html
predict.spDS html
predict.spNMix html
predict.svcAbund html
predict.svcMsAbund html
sfMsAbund html
sfMsDS html
sfMsNMix html
simAbund html
simDS html
simMsAbund html
simMsDS html
simMsNMix html
simNMix html
spAbund html
spDS html
spNMix html
summary.DS html
summary.NMix html
summary.abund html
summary.lfMsAbund html
summary.lfMsDS html
summary.lfMsNMix html
summary.msAbund html
summary.msDS html
summary.msNMix html
summary.sfMsAbund html
summary.sfMsDS html
summary.sfMsNMix html
summary.spAbund html
summary.spDS html
summary.spNMix html
summary.svcAbund html
summary.svcMsAbund html
svcAbund html
svcMsAbund html
waicAbund html
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spAbundance)