* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘snplinkage’ ...
** package ‘snplinkage’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘snplinkage’
    finding HTML links ... done
    chisq_pvalues                           html  
    chisq_pvalues_gdata                     html  
    compound                                html  
    crohn                                   html  
    diamond_annots                          html  
    exposition                              html  
    fetch_allele1.GdsGenotypeReader         html  
    fetch_allele1.GenotypeData              html  
    fetch_allele1.GenotypeDataSubset        html  
    fetch_allele1.default                   html  
    fetch_allele2.GdsGenotypeReader         html  
    fetch_allele2.GenotypeData              html  
    fetch_allele2.GenotypeDataSubset        html  
    fetch_allele2.default                   html  
    fetch_gds.GdsGenotypeReader             html  
    fetch_gds.GenotypeData                  html  
    fetch_gds.GenotypeDataSubset            html  
    fetch_gds.default                       html  
    gdata_add_gene_annots                   html  
    gdata_add_gene_annots_aim_example       html  
    gdata_add_gene_annots_hladr_example     html  
    gdata_scans_annots                      html  
    gdata_snps_annots                       html  
    get_biomart_metadb                      html  
    get_scan_annot.GenotypeData             html  
    get_scan_annot.GenotypeDataSubset       html  
    get_snp_annot.GenotypeData              html  
    get_snp_annot.GenotypeDataSubset        html  
    ggplot_associations                     html  
    ggplot_ld                               html  
    ggplot_snp_pos                          html  
    gtable_ld                               html  
    gtable_ld_associations                  html  
    gtable_ld_associations_combine          html  
    gtable_ld_associations_gdata            html  
    gtable_ld_gdata                         html  
    gtable_ld_grobs                         html  
    is_snp_first_dim.GdsGenotypeReader      html  
    is_snp_first_dim.GenotypeData           html  
    is_snp_first_dim.MatrixGenotypeReader   html  
    is_snp_first_dim.NcdfGenotypeReader     html  
    is_snp_first_dim.default                html  
    is_snp_first_dim.gds.class              html  
    load_gds_as_genotype_data               html  
    parallel_apply                          html  
    pipe                                    html  
    print_qc_as_tex_table                   html  
    save_hgdp_as_gds                        html  
    select_region_idxs                      html  
    snplinkage-package                      html  
    snprelate_allele_frequencies            html  
    snprelate_ld                            html  
    snprelate_ld_select                     html  
    snprelate_qc                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (snplinkage)