• using R version 4.4.2 Patched (2024-12-13 r87451)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘smoothAPC/DESCRIPTION’ ... OK
• this is package ‘smoothAPC’ version ‘0.3’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘smoothAPC’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/19s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... NOTE   'LazyData' is specified without a 'data' directory
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [496s/584s] ERROR   Running ‘testthat.R’ [496s/583s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(smoothAPC)   >   > test_check("smoothAPC")      |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \   |   /   |   /   -   \   |   /   -   \   |   /   -   \   |   /   -   \ [ FAIL 11 | WARN 0 | SKIP 5 | PASS 16 ]      ══ Skipped tests (5) ═══════════════════════════════════════════════════════════   • On CRAN (3): 'test_twoStepDemogSmooth.R:22:3',     'test_twoStepDemogSmooth.R:32:3', 'test_twoStepDemogSmooth.R:46:3'   • empty test (2): 'test_autoDemogSmooth.R:35:1', 'test_demogSmooth.R:36:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_autoDemogSmooth.R:23:3'): Testing autoSmoothAPC on linear data with noise, effects = FALSE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 11.8)   [1] -3.064 - 1.00 == -4.06449   [2] -12.499 - 1.01 == -13.50885   [3] 4.183 - 1.02 == 3.16266   [4] -12.523 - 1.03 == -13.55349   [5] -2.907 - 1.04 == -3.94701   [6] 0.827 - 1.05 == -0.22257   [7] 1.150 - 1.06 == 0.09028   [8] 1.091 - 1.07 == 0.02097   [9] 1.081 - 1.08 == 0.00111   ...   ── Failure ('test_autoDemogSmooth.R:30:3'): Testing autoSmoothAPC on linear data with noise, effects = TRUE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 21.7)   [1] -7.821 - 1.00 == -8.821   [2] 30.571 - 1.01 == 29.561   [3] 7.696 - 1.02 == 6.676   [4] 9.790 - 1.03 == 8.760   [5] 7.972 - 1.04 == 6.932   [6] 6.031 - 1.05 == 4.981   [7] 4.101 - 1.06 == 3.041   [8] 2.168 - 1.07 == 1.098   [9] 0.232 - 1.08 == -0.848   ...   ── Failure ('test_autoDemogSmooth.R:31:3'): Testing autoSmoothAPC on linear data with noise, effects = TRUE ──   sm$yearsEffect not equivalent to `zer`.   100/100 mismatches (average diff: 14.1)   [1] -14.645 - 0 == -14.645   [2] -12.653 - 0 == -12.653   [3] -10.684 - 0 == -10.684   [4] -8.747 - 0 == -8.747   [5] -6.826 - 0 == -6.826   [6] -4.911 - 0 == -4.911   [7] -2.995 - 0 == -2.995   [8] -1.076 - 0 == -1.076   [9] 0.846 - 0 == 0.846   ...   ── Failure ('test_autoDemogSmooth.R:32:3'): Testing autoSmoothAPC on linear data with noise, effects = TRUE ──   sm$cohortEffect not equivalent to `zer`.   44/100 mismatches (average diff: 6.59)   [1] 23.87 - 0 == 23.87   [2] -17.19 - 0 == -17.19   [3] 3.69 - 0 == 3.69   [11] -19.53 - 0 == -19.53   [12] 21.52 - 0 == 21.52   [13] -15.00 - 0 == -15.00   [14] 3.07 - 0 == 3.07   [21] 3.81 - 0 == 3.81   [22] -16.58 - 0 == -16.58   ...   ── Failure ('test_demogSmooth.R:19:3'): Testing smoothAPC on linear data with one outlier and w/o ridges, effects = FALSE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 12)   [1] -12.83 - 1.00 == -13.83   [2] 17.64 - 1.01 == 16.63   [3] 38.23 - 1.02 == 37.21   [4] 22.01 - 1.03 == 20.98   [5] 3.29 - 1.04 == 2.25   [6] -5.45 - 1.05 == -6.50   [7] -6.44 - 1.06 == -7.50   [8] -4.40 - 1.07 == -5.47   [9] -2.16 - 1.08 == -3.24   ...   ── Failure ('test_demogSmooth.R:49:3'): Testing smoothAPC on linear data with one cohort effect and w/o period effects, effects = FALSE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 108)   [1] 475.4 - 1.00 == 474.4   [2] 324.4 - 1.01 == 323.4   [3] 185.5 - 1.02 == 184.4   [4] 82.2 - 1.03 == 81.2   [5] 19.3 - 1.04 == 18.3   [6] -11.0 - 1.05 == -12.0   [7] -20.1 - 1.06 == -21.1   [8] -18.6 - 1.07 == -19.7   [9] -14.5 - 1.08 == -15.6   ...   ── Failure ('test_demogSmooth.R:60:3'): Testing smoothAPC on linear data with one period effect and w/o cohort effects, effects = FALSE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 114)   [1] -36.1 - 1.00 == -37.1   [2] -36.1 - 1.01 == -37.1   [3] -36.1 - 1.02 == -37.1   [4] -36.0 - 1.03 == -37.1   [5] -36.0 - 1.04 == -37.1   [6] -36.0 - 1.05 == -37.1   [7] -36.0 - 1.06 == -37.1   [8] -36.0 - 1.07 == -37.1   [9] -36.0 - 1.08 == -37.1   ...   ── Failure ('test_demogSmooth.R:67:3'): Testing smoothAPC on linear data with one period effect and with one cohort effects, effects = FALSE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 212)   [1] 438.3 - 1.00 == 437.3   [2] 287.3 - 1.01 == 286.3   [3] 148.4 - 1.02 == 147.4   [4] 45.2 - 1.03 == 44.1   [5] -17.8 - 1.04 == -18.8   [6] -48.0 - 1.05 == -49.1   [7] -57.1 - 1.06 == -58.2   [8] -55.7 - 1.07 == -56.7   [9] -51.6 - 1.08 == -52.6   ...   ── Failure ('test_demogSmooth.R:74:3'): Testing smoothAPC on linear data with noise, one period effect and with one cohort effects, effects = TRUE ──   sm$result not equivalent to `m`.   100/100 mismatches (average diff: 111)   [1] 66.9 - 1.00 == 65.9   [2] 117.2 - 1.01 == 116.2   [3] 153.7 - 1.02 == 152.7   [4] 143.4 - 1.03 == 142.4   [5] 122.5 - 1.04 == 121.5   [6] 106.9 - 1.05 == 105.9   [7] 97.5 - 1.06 == 96.5   [8] 91.7 - 1.07 == 90.6   [9] 87.7 - 1.08 == 86.6   ...   ── Failure ('test_demogSmooth.R:75:3'): Testing smoothAPC on linear data with noise, one period effect and with one cohort effects, effects = TRUE ──   sm$yearsEffect not equivalent to `per`.   100/100 mismatches (average diff: 105)   [1] -206.9 - 0 == -206.9   [2] -180.7 - 0 == -180.7   [3] -157.7 - 0 == -157.7   [4] -138.3 - 0 == -138.3   [5] -122.1 - 0 == -122.1   [6] -108.8 - 0 == -108.8   [7] -97.8 - 0 == -97.8   [8] -88.5 - 0 == -88.5   [9] -80.4 - 0 == -80.4   ...   ── Failure ('test_demogSmooth.R:76:3'): Testing smoothAPC on linear data with noise, one period effect and with one cohort effects, effects = TRUE ──   sm$cohortEffect not equivalent to `coh`.   44/100 mismatches (average diff: 43.6)   [1] 1223.65 - 1000 == 223.65   [2] -3.36 - 0 == -3.36   [3] -16.16 - 0 == -16.16   [11] -44.54 - 0 == -44.54   [12] 1201.35 - 1000 == 201.35   [13] -12.95 - 0 == -12.95   [14] -17.47 - 0 == -17.47   [21] -109.58 - 0 == -109.58   [22] -44.54 - 0 == -44.54   ...      [ FAIL 11 | WARN 0 | SKIP 5 | PASS 16 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE