* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘sits’ ...
** package ‘sits’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0Dxc9z/R.INSTALL1ce8a8463513c5/sits/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c combine_data.cpp -o combine_data.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c detect_change_distances.cpp -o detect_change_distances.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c dtw.cpp -o dtw.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kernel.cpp -o kernel.o
kernel.cpp: In function ‘double _modal(const Rcpp::NumericVector&)’:
kernel.cpp:47:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
   47 |     for(size_t i=0; i<neigh.size(); i++) {
      |                     ~^~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kohonen_distances.cpp -o kohonen_distances.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c kohonen_som.cpp -o kohonen_som.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c label_class.cpp -o label_class.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c linear_interp.cpp -o linear_interp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nnls_solver.cpp -o nnls_solver.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c normalize_data.cpp -o normalize_data.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c normalize_data_0.cpp -o normalize_data_0.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c reduce_fns.cpp -o reduce_fns.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sampling_window.cpp -o sampling_window.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c smooth.cpp -o smooth.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c smooth_bayes.cpp -o smooth_bayes.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c smooth_sgp.cpp -o smooth_sgp.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c smooth_whit.cpp -o smooth_whit.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c softmax.cpp -o softmax.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native   -c uncertainty.cpp -o uncertainty.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o sits.so RcppExports.o combine_data.o detect_change_distances.o dtw.o kernel.o kohonen_distances.o kohonen_som.o label_class.o linear_interp.o nnls_solver.o normalize_data.o normalize_data_0.o reduce_fns.o sampling_window.o smooth.o smooth_bayes.o smooth_sgp.o smooth_whit.o softmax.o uncertainty.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0Dxc9z/R.INSTALL1ce8a8463513c5/sits/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0Dxc9z/R.INSTALL1ce8a8463513c5/sits/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0Dxc9z/R.INSTALL1ce8a8463513c5/sits/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-sits/00new/sits/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘sits’
    finding HTML links ... done
    cerrado_2classes                        html  
    dot-check_date_parameter                html  
    hist.probs_cube                         html  
    hist.raster_cube                        html  
    hist.sits                               html  
    hist.uncertainty_cube                   html  
    impute_linear                           html  
    plot                                    html  
    plot.class_cube                         html  
    plot.class_vector_cube                  html  
    plot.dem_cube                           html  
    plot.geo_distances                      html  
    plot.patterns                           html  
    plot.predicted                          html  
    plot.probs_cube                         html  
    plot.probs_vector_cube                  html  
    plot.raster_cube                        html  
    plot.rfor_model                         html  
    plot.sar_cube                           html  
    plot.sits_accuracy                      html  
    plot.sits_cluster                       html  
    plot.som_evaluate_cluster               html  
    plot.som_map                            html  
    plot.torch_model                        html  
    plot.uncertainty_cube                   html  
    plot.uncertainty_vector_cube            html  
    plot.variance_cube                      html  
    plot.vector_cube                        html  
    plot.xgb_model                          html  
    point_mt_6bands                         html  
    print.sits_accuracy                     html  
    print.sits_area_accuracy                html  
    samples_l8_rondonia_2bands              html  
    samples_modis_ndvi                      html  
    sits-package                            html  
    sits_accuracy                           html  
    sits_accuracy_summary                   html  
    sits_add_base_cube                      html  
    sits_apply                              html  
    sits_as_sf                              html  
    sits_bands                              html  
    sits_bbox                               html  
    sits_classify                           html  
    sits_clean                              html  
    sits_cluster_clean                      html  
    sits_cluster_dendro                     html  
    sits_cluster_frequency                  html  
    sits_colors                             html  
    sits_colors_qgis                        html  
    sits_colors_reset                       html  
    sits_colors_set                         html  
    sits_colors_show                        html  
    sits_combine_predictions                html  
    sits_confidence_sampling                html  
    sits_config                             html  
    sits_config_show                        html  
    sits_config_user_file                   html  
    sits_cube                               html  
    sits_cube_copy                          html  
    sits_factory_function                   html  
    sits_filter                             html  
    sits_formula_linear                     html  
    sits_formula_logref                     html  
    sits_geo_dist                           html  
    sits_get_data                           html  
    sits_impute                             html  
    sits_kfold_validate                     html  
    sits_label_classification               html  
    sits_labels                             html  
    sits_labels_summary                     html  
    sits_lighttae                           html  
    sits_list_collections                   html  
    sits_merge                              html  
    sits_mgrs_to_roi                        html  
    sits_mixture_model                      html  
    sits_mlp                                html  
    sits_model_export                       html  
    sits_mosaic                             html  
    sits_patterns                           html  
    sits_pred_features                      html  
    sits_pred_normalize                     html  
    sits_pred_reference                     html  
    sits_pred_sample                        html  
    sits_predictors                         html  
    sits_reclassify                         html  
    sits_reduce                             html  
    sits_reduce_imbalance                   html  
    sits_regularize                         html  
    sits_rfor                               html  
    sits_run_examples                       html  
    sits_run_tests                          html  
    sits_sample                             html  
    sits_sampling_design                    html  
    sits_segment                            html  
    sits_select                             html  
    sits_sgolay                             html  
    sits_show_prediction                    html  
    sits_slic                               html  
    sits_smooth                             html  
    sits_som                                html  
    sits_som_clean_samples                  html  
    sits_som_evaluate_cluster               html  
    sits_som_remove_samples                 html  
    sits_stats                              html  
    sits_stratified_sampling                html  
    sits_svm                                html  
    sits_tae                                html  
    sits_tempcnn                            html  
    sits_timeline                           html  
    sits_to_csv                             html  
    sits_to_xlsx                            html  
    sits_train                              html  
    sits_tuning                             html  
    sits_tuning_hparams                     html  
    sits_uncertainty                        html  
    sits_uncertainty_sampling               html  
    sits_validate                           html  
    sits_variance                           html  
    sits_view                               html  
    sits_whittaker                          html  
    sits_xgboost                            html  
    summary.class_cube                      html  
    summary.raster_cube                     html  
    summary.sits                            html  
    summary.sits_accuracy                   html  
    summary.sits_area_accuracy              html  
    summary.variance_cube                   html  
    tick-sits_labels-set-tick               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sits)