* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘simplextree’ ... ** package ‘simplextree’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’ using C++11 make[1]: Entering directory '/tmp/Rtmp34kD74/R.INSTALL9f4ad6ca13100/simplextree/src' g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from RcppExports.cpp:4: ../inst/include/simplextree.h:168:10: warning: extra ‘;’ [-Wpedantic] 168 | }; | ^ | - In file included from ../inst/include/simplextree.h:252: ../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ‘;’ [-Wpedantic] 159 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ‘;’ [-Wpedantic] 296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ‘;’ [-Wpedantic] 393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ‘;’ [-Wpedantic] 443 | update_simplex(){ return; }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ‘;’ [-Wpedantic] 475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ‘;’ [-Wpedantic] 560 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ‘;’ [-Wpedantic] 647 | update_simplex(){ return; }; | ^ | - g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c UnionFind.cpp -o UnionFind.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c discreteR.cpp -o discreteR.o g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nerve.cpp -o nerve.o In file included from nerve.cpp:5: ../inst/include/simplextree.h:168:10: warning: extra ‘;’ [-Wpedantic] 168 | }; | ^ | - In file included from ../inst/include/simplextree.h:252: ../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ‘;’ [-Wpedantic] 159 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ‘;’ [-Wpedantic] 296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ‘;’ [-Wpedantic] 393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ‘;’ [-Wpedantic] 443 | update_simplex(){ return; }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ‘;’ [-Wpedantic] 475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ‘;’ [-Wpedantic] 560 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ‘;’ [-Wpedantic] 647 | update_simplex(){ return; }; | ^ | - g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simplextree_module.cpp -o simplextree_module.o In file included from simplextree_module.cpp:5: ../inst/include/simplextree.h:168:10: warning: extra ‘;’ [-Wpedantic] 168 | }; | ^ | - In file included from ../inst/include/simplextree.h:252: ../inst/include/simplextree/st_iterators.hpp:159:18: warning: extra ‘;’ [-Wpedantic] 159 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:296:143: warning: extra ‘;’ [-Wpedantic] 296 | preorder(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, preorder >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:393:149: warning: extra ‘;’ [-Wpedantic] 393 | level_order(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, level_order >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:443:36: warning: extra ‘;’ [-Wpedantic] 443 | update_simplex(){ return; }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:475:151: warning: extra ‘;’ [-Wpedantic] 475 | coface_roots(const SimplexTree* st_, node_ptr start, P1 pred1, P2 pred2) : TraversalInterface< ts, coface_roots >(st_, start, pred1, pred2){}; | ^ | - ../inst/include/simplextree/st_iterators.hpp:560:8: warning: extra ‘;’ [-Wpedantic] 560 | }; | ^ | - ../inst/include/simplextree/st_iterators.hpp:647:36: warning: extra ‘;’ [-Wpedantic] 647 | update_simplex(){ return; }; | ^ | - g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o simplextree.so RcppExports.o UnionFind.o discreteR.o nerve.o simplextree_module.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp34kD74/R.INSTALL9f4ad6ca13100/simplextree/src' make[1]: Entering directory '/tmp/Rtmp34kD74/R.INSTALL9f4ad6ca13100/simplextree/src' make[1]: Leaving directory '/tmp/Rtmp34kD74/R.INSTALL9f4ad6ca13100/simplextree/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-simplextree/00new/simplextree/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘simplextree’ finding HTML links ... done adjacent html as.list.st_traversal html clear html clone html coface_roots html cofaces html collapse html contract html degree html deserialize html empty_face html enclosing_radius html expand html faces html find html flag html generate_ids html insert html inverse.choose html is_face html is_tree html k_simplices html k_skeleton html level_order html link html maximal html nat_to_sub html nerve html pipe html plot.simplextree html plot_simplextree html preorder html print.st_traversal html print_simplices html reindex html remove html rips html serialize html simplex_tree html simplextree-package html sub_to_nat html threshold html traverse html union_find html *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (simplextree)