* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘signalHsmm’ ...
** package ‘signalHsmm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp03MzN1/R.INSTALL99bdb68b31f1c/signalHsmm/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c duration_viterbi.cpp -o duration_viterbi.o
duration_viterbi.cpp: In function ‘Rcpp::List duration_viterbi(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericMatrix, Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
duration_viterbi.cpp:50:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   50 |   for(unsigned int j=0; j<nstates; j++) {
      |                         ~^~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o signalHsmm.so RcppExports.o duration_viterbi.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp03MzN1/R.INSTALL99bdb68b31f1c/signalHsmm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp03MzN1/R.INSTALL99bdb68b31f1c/signalHsmm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp03MzN1/R.INSTALL99bdb68b31f1c/signalHsmm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-signalHsmm/00new/signalHsmm/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘signalHsmm’
    finding HTML links ... done
    aaaggregation                           html  
    add_k_mer_state                         html  
    benchmark_dat                           html  
    duration_viterbi                        html  
    find_nhc                                html  
    gui_signalHsmm                          html  
    hsmm_pred                               html  
    hsmm_pred_list                          html  
    is_protein                              html  
    plot.hsmm_pred                          html  
    pred2df                                 html  
    predict.sighsmm_model                   html  
    read_txt                                html  
    read_uniprot                            html  
    run_signalHsmm                          html  
    signalHsmm                              html  
    summary.hsmm_pred                       html  
    summary.hsmm_pred_list                  html  
    train_hsmm                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (signalHsmm)