* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shiftR’ ...
** package ‘shiftR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCLOlXF/R.INSTALL33970024235198/shiftR/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c c_code.c -o c_code.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o shiftR.so c_code.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCLOlXF/R.INSTALL33970024235198/shiftR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCLOlXF/R.INSTALL33970024235198/shiftR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCLOlXF/R.INSTALL33970024235198/shiftR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-shiftR/00new/shiftR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘shiftR’
    finding HTML links ... done
    cramerV                                 html  
    enrichmentAnalysis                      html  
    getOffsets                              html  
    matchDatasets                           html  
    shiftR-package                          html  
    shiftrPermBinary                        html  
    shiftrPrepare                           html  
    simulate                                html  
    singlePermutation                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shiftR)