* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘shapr’ ...
** package ‘shapr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpilcWMc/R.INSTALL30c6b7335cb2ec/shapr/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c AICc.cpp -o AICc.o
AICc.cpp: In function ‘arma::mat hat_matrix_cpp(arma::mat, arma::mat, bool, double)’:
AICc.cpp:52:28: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
52 | for(icol = 0; icol < nrows; icol++)
| ~~~~~^~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Copula.cpp -o Copula.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Gaussian.cpp -o Gaussian.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c distance.cpp -o distance.o
distance.cpp: In function ‘arma::cube mahalanobis_distance_cpp(Rcpp::List, arma::mat, arma::mat, arma::mat, bool)’:
distance.cpp:78:32: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
78 | for(icol = 0; icol < ntrain; icol++)
| ~~~~~^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c features.cpp -o features.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c impute_data.cpp -o impute_data.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c weighted_matrix.cpp -o weighted_matrix.o
weighted_matrix.cpp: In function ‘arma::mat weight_matrix_cpp(Rcpp::List, int, int, Rcpp::NumericVector)’:
weighted_matrix.cpp:68:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
68 | for (int j = 0; j < Z.n_cols; j++) {
| ~~^~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o shapr.so AICc.o Copula.o Gaussian.o RcppExports.o distance.o features.o impute_data.o weighted_matrix.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpilcWMc/R.INSTALL30c6b7335cb2ec/shapr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpilcWMc/R.INSTALL30c6b7335cb2ec/shapr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpilcWMc/R.INSTALL30c6b7335cb2ec/shapr/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-shapr/00new/shapr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘shapr’
finding HTML links ... done
additional_regression_setup html
aicc_full_cpp html
aicc_full_single_cpp html
append_vS_list html
categorical_to_one_hot_layer html
check_categorical_valid_MCsamp html
check_convergence html
check_groups html
check_verbose html
cli_compute_vS html
cli_iter html
cli_startup html
coalition_matrix_cpp html
compute_MSEv_eval_crit html
compute_estimates html
compute_shapley html
compute_time html
compute_vS html
convert_feature_name_to_idx html
correction_matrix_cpp html
create_coalition_table html
create_ctree html
create_marginal_data_cat html
create_marginal_data_gaussian html
create_marginal_data_training html
default_doc_export html
default_doc_internal html
exact_coalition_table html
explain html
explain_forecast html
finalize_explanation html
gauss_cat_loss html
gauss_cat_parameters html
gauss_cat_sampler_most_likely html
gauss_cat_sampler_random html
gaussian_transform html
gaussian_transform_separate html
get_S_causal_steps html
get_cov_mat html
get_data_forecast html
get_data_specs html
get_extra_comp_args_default html
get_extra_parameters html
get_feature_specs html
get_iterative_args_default html
get_max_n_coalitions_causal html
get_model_specs html
get_mu_vec html
get_output_args_default html
get_predict_model html
get_supported_approaches html
get_supported_models html
get_valid_causal_coalitions html
hat_matrix_cpp html
inv_gaussian_transform_cpp html
lag_data html
mahalanobis_distance_cpp html
mcar_mask_generator html
memory_layer html
model_checker html
observation_impute html
observation_impute_cpp html
paired_sampler html
plot.shapr html
plot_MSEv_eval_crit html
plot_SV_several_approaches html
plot_vaeac_eval_crit html
plot_vaeac_imputed_ggpairs html
predict_model html
prepare_data html
prepare_data_causal html
prepare_data_copula_cpp html
prepare_data_copula_cpp_caus html
prepare_data_gaussian_cpp html
prepare_data_gaussian_cpp_caus html
prepare_data_single_coalition html
prepare_next_iteration html
print.shapr html
print_iter html
process_factor_data html
quantile_type7_cpp html
reg_forecast_setup html
regression.check_namespaces html
regression.check_parameters html
regression.check_recipe_func html
regression.check_sur_n_comb html
regression.check_vfold_cv_para html
regression.cv_message html
regression.get_string_to_R html
regression.get_tune html
regression.get_y_hat html
regression.surrogate_aug_data html
regression.train_model html
release_questions html
rss_cpp html
sample_coalition_table html
sample_coalitions_cpp_str_paired html
sample_combinations html
sample_ctree html
save_results html
setup html
setup_approach html
shapley_setup html
shapley_weights html
shapr-package html
skip_connection html
specified_masks_mask_generator html
specified_prob_mask_generator html
test_predict_model html
testing_cleanup html
vaeac html
vaeac_categorical_parse_params html
vaeac_check_activation_func html
vaeac_check_cuda html
vaeac_check_epoch_values html
vaeac_check_extra_named_list html
vaeac_check_logicals html
vaeac_check_mask_gen html
vaeac_check_masking_ratio html
vaeac_check_parameters html
vaeac_check_positive_integers html
vaeac_check_positive_numerics html
vaeac_check_probabilities html
vaeac_check_save_names html
vaeac_check_save_parameters html
vaeac_check_which_vaeac_model html
vaeac_check_x_colnames html
vaeac_compute_normalization html
vaeac_dataset html
vaeac_extend_batch html
vaeac_get_current_save_state html
vaeac_get_data_objects html
vaeac_get_evaluation_criteria html
vaeac_get_extra_para_default html
vaeac_get_full_state_list html
vaeac_get_mask_generator_name html
vaeac_get_model_from_checkp html
vaeac_get_n_decimals html
vaeac_get_optimizer html
vaeac_get_save_file_names html
vaeac_get_val_iwae html
vaeac_get_x_explain_extended html
vaeac_impute_missing_entries html
vaeac_kl_normal_normal html
vaeac_normal_parse_params html
vaeac_normalize_data html
vaeac_postprocess_data html
vaeac_preprocess_data html
vaeac_print_train_summary html
vaeac_save_state html
vaeac_train_model html
vaeac_train_model_auxiliary html
vaeac_train_model_continue html
vaeac_update_para_locations html
vaeac_update_pretrained_model html
weight_matrix html
weight_matrix_cpp html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (shapr)