- using R version 4.4.2 Patched (2025-01-18 r87609)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-12) 14.2.0
GNU Fortran (Debian 14.2.0-12) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘see/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘see’ version ‘0.9.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘see’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [26s/30s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [17s/25s] ERROR
Running examples in ‘see-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.see_check_collinearity
> ### Title: Plot method for multicollinearity checks
> ### Aliases: plot.see_check_collinearity
>
> ### ** Examples
>
> library(performance)
> m <- lm(mpg ~ wt + cyl + gear + disp, data = mtcars)
> result <- check_collinearity(m)
> result
# Check for Multicollinearity
Low Correlation
Term VIF VIF 95% CI Increased SE Tolerance Tolerance 95% CI
gear 1.53 [1.19, 2.51] 1.24 0.65 [0.40, 0.84]
Moderate Correlation
Term VIF VIF 95% CI Increased SE Tolerance Tolerance 95% CI
wt 5.05 [3.21, 8.41] 2.25 0.20 [0.12, 0.31]
cyl 5.41 [3.42, 9.04] 2.33 0.18 [0.11, 0.29]
disp 9.97 [6.08, 16.85] 3.16 0.10 [0.06, 0.16]
> plot(result)
Warning: Argument `pattern` is deprecated. Please use `select` instead.
Error: Following variable(s) were not found: Component
Possibly misspelled?
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [55s/29s] ERROR
Running ‘testthat.R’ [55s/29s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # graphics engine changed in R 4.3, and so snapshots generated on
> # previous R version won't work with later R releases
> if (require("testthat", quietly = TRUE) && require("vdiffr", quietly = TRUE) && getRversion() >= "4.4.0") {
+ library(testthat)
+ library(see)
+
+ test_check("see")
+ }
Starting 2 test processes
[ FAIL 1 | WARN 1 | SKIP 17 | PASS 32 ]
══ Skipped tests (17) ══════════════════════════════════════════════════════════
• On CRAN (17): 'test-check_model.R:2:3', 'test-plot.check_normality.R:18:3',
'test-plot.compare_parameters.R:20:3', 'test-plot.check_dag.R:17:3',
'test-plot.check_dag.R:68:3', 'test-plot.check_dag.R:90:3',
'test-plot.effectsize_table.R:5:3', 'test-plot.p_direction.R:11:1',
'test-plot.n_factors.R:7:3', 'test-plot.p_significance.R:11:1',
'test-plot.performance_roc.R:14:3', 'test-plot.performance_pp_check.R:6:3',
'test-scale_color_colorhex_c.R:3:3', 'test-vdiffr_bayestestr_plots.R:11:3',
'test-vdiffr_geoms_coords.R:13:3', 'test-vdiffr_scale_color.R:2:3',
'test-vdiffr_themes.R:11:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-plot.check_collinearity.R:5:3'): `plot.see_check_collinearity()` works ──
Error: Following variable(s) were not found: Component
Possibly misspelled?
Backtrace:
▆
1. ├─testthat::expect_s3_class(plot(result), "gg") at test-plot.check_collinearity.R:5:3
2. │ └─testthat::quasi_label(enquo(object), arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::plot(result)
5. ├─performance:::plot.check_collinearity(result)
6. ├─base::NextMethod()
7. └─see:::plot.see_check_collinearity(result)
8. └─datawizard::data_rename(...)
9. └─datawizard:::.select_nse(...)
10. └─datawizard:::.eval_expr(...)
11. └─datawizard:::.select_char(...)
12. └─datawizard:::.action_if_not_found(...)
13. └─insight::format_error(msg, msg2)
14. └─insight::format_alert(..., type = "error")
[ FAIL 1 | WARN 1 | SKIP 17 | PASS 32 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [8s/11s] OK
- checking HTML version of manual ... [3s/6s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs