* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘scimo’ ... ** this is package ‘scimo’ version ‘0.0.2’ ** package ‘scimo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘scimo’ finding HTML links ... done cheese_abundance html cv html pedcan_expression html pipe html required_pkgs.scimo html scimo-package html step_aggregate_hclust html finding level-2 HTML links ... done Rd warning: step_aggregate_hclust.Rd:31: missing link ‘selections’ Rd warning: step_aggregate_hclust.Rd:59: missing link ‘bake’ Rd warning: step_aggregate_hclust.Rd:60: missing link ‘prep’ step_aggregate_list html Rd warning: step_aggregate_list.Rd:31: missing link ‘selections’ Rd warning: step_aggregate_list.Rd:61: missing link ‘bake’ Rd warning: step_aggregate_list.Rd:62: missing link ‘prep’ step_rownormalize_tss html Rd warning: step_rownormalize_tss.Rd:25: missing link ‘selections’ Rd warning: step_rownormalize_tss.Rd:35: missing link ‘bake’ Rd warning: step_rownormalize_tss.Rd:36: missing link ‘prep’ step_select_background html Rd warning: step_select_background.Rd:28: missing link ‘selections’ Rd warning: step_select_background.Rd:43: missing link ‘bake’ Rd warning: step_select_background.Rd:44: missing link ‘prep’ step_select_cv html Rd warning: step_select_cv.Rd:28: missing link ‘selections’ Rd warning: step_select_cv.Rd:46: missing link ‘bake’ Rd warning: step_select_cv.Rd:47: missing link ‘prep’ step_select_kruskal html Rd warning: step_select_kruskal.Rd:30: missing link ‘selections’ Rd warning: step_select_kruskal.Rd:53: missing link ‘bake’ Rd warning: step_select_kruskal.Rd:54: missing link ‘prep’ step_select_wilcoxon html Rd warning: step_select_wilcoxon.Rd:30: missing link ‘selections’ Rd warning: step_select_wilcoxon.Rd:53: missing link ‘bake’ Rd warning: step_select_wilcoxon.Rd:54: missing link ‘prep’ step_taxonomy html Rd warning: step_taxonomy.Rd:27: missing link ‘selections’ Rd warning: step_taxonomy.Rd:46: missing link ‘bake’ Rd warning: step_taxonomy.Rd:47: missing link ‘prep’ var_to_keep html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scimo)