* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ruv’ ...
** package ‘ruv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkW3pG5/R.INSTALL2bae2d618a15ab/ruv/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getsizeratios.c -o getsizeratios.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c increasingreg.c -o increasingreg.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sigmashrink.c -o sigmashrink.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wipeout.c -o wipeout.o
wipeout.c: In function ‘wipeout’:
wipeout.c:20:14: warning: ‘maxindex’ may be used uninitialized [-Wmaybe-uninitialized]
20 | indicator[maxindex] = 0;
| ^
wipeout.c:5:17: note: ‘maxindex’ was declared here
5 | int start, i, maxindex;
| ^~~~~~~~
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ruv.so getsizeratios.o increasingreg.o init.o sigmashrink.o wipeout.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkW3pG5/R.INSTALL2bae2d618a15ab/ruv/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpkW3pG5/R.INSTALL2bae2d618a15ab/ruv/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpkW3pG5/R.INSTALL2bae2d618a15ab/ruv/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ruv/00new/ruv/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ruv’
finding HTML links ... done
RUV2 html
RUV4 html
RUVI html
RUVIII html
RUVinv html
RUVrinv html
collapse.replicates html
design.matrix html
getK html
get_empirical_variances html
google_search html
inputcheck1 html
invvar html
projectionplotvariables html
randinvvar html
replicate.matrix html
residop html
ruv-package html
ruv_cancorplot html
ruv_ecdf html
ruv_hist html
ruv_projectionplot html
ruv_rankplot html
ruv_residuals html
ruv_rle html
ruv_scree html
ruv_shiny html
ruv_summary html
ruv_svdgridplot html
ruv_svdplot html
ruv_varianceplot html
ruv_volcano html
sigmashrink html
variance_adjust html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ruv)