* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘rpact’ ...
** package ‘rpact’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpnny7Ga/R.INSTALL22ec5f647594eb/rpact/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_as251.cpp -o f_as251.o
gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_as251_fortran.f -o f_as251_fortran.o
f_as251_fortran.f:565:72:
565 | ZEXP(Z) = EXP(Z)
| 1
Warning: Obsolescent feature: Statement function at (1)
f_as251_fortran.f:793:5:
793 | 30 IF (DLG .LE. EPS1) GO TO 50
| 1
Warning: Label 30 at (1) defined but not used [-Wunused-label]
f_as251_fortran.f:192:72:
192 | ESTT(LVL) = ESTR
| ^
Warning: ‘estr’ may be used uninitialized [-Wmaybe-uninitialized]
f_as251_fortran.f:24:50:
24 | * FUNCN, WT, CONTRB, DLG, DX, DA, ESTL, ESTR, SUM, EXCESS, ERROR,
| ^
note: ‘estr’ was declared here
f_as251_fortran.f:161:72:
161 | DLG = ABS(CONTRB - SUM)
| ^
Warning: ‘contrb’ may be used uninitialized [-Wmaybe-uninitialized]
f_as251_fortran.f:24:25:
24 | * FUNCN, WT, CONTRB, DLG, DX, DA, ESTL, ESTR, SUM, EXCESS, ERROR,
| ^
note: ‘contrb’ was declared here
f_as251_fortran.f:247:72:
247 | BOUND = PART3
| ^
Warning: ‘part3’ may be used uninitialized [-Wmaybe-uninitialized]
f_as251_fortran.f:23:50:
23 | * ERFAC, EL, EL1, BOUND, PART0, PART2, PART3, FUNC0, FUNC2,
| ^
note: ‘part3’ was declared here
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_assertions.cpp -o f_assertions.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_count_data_estimation.cpp -o f_count_data_estimation.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_design_fisher_combination_test.cpp -o f_design_fisher_combination_test.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_design_group_sequential.cpp -o f_design_group_sequential.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_means.cpp -o f_simulation_base_means.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_rates.cpp -o f_simulation_base_rates.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_base_survival.cpp -o f_simulation_base_survival.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_simulation_survival_utilities.cpp -o f_simulation_survival_utilities.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_utilities.cpp -o f_utilities.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o rpact.so RcppExports.o f_as251.o f_as251_fortran.o f_assertions.o f_count_data_estimation.o f_design_fisher_combination_test.o f_design_group_sequential.o f_simulation_base_means.o f_simulation_base_rates.o f_simulation_base_survival.o f_simulation_survival_utilities.o f_utilities.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpnny7Ga/R.INSTALL22ec5f647594eb/rpact/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpnny7Ga/R.INSTALL22ec5f647594eb/rpact/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpnny7Ga/R.INSTALL22ec5f647594eb/rpact/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-rpact/00new/rpact/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘rpact’
finding HTML links ... done
AccrualTime html
AnalysisResults html
AnalysisResultsConditionalDunnett html
AnalysisResultsEnrichment html
AnalysisResultsEnrichmentFisher html
AnalysisResultsEnrichmentInverseNormal
html
AnalysisResultsFisher html
AnalysisResultsGroupSequential html
AnalysisResultsInverseNormal html
AnalysisResultsMultiArm html
AnalysisResultsMultiArmFisher html
AnalysisResultsMultiArmInverseNormal html
AnalysisResultsMultiHypotheses html
ClosedCombinationTestResults html
ConditionalPowerResults html
ConditionalPowerResultsEnrichmentMeans
html
ConditionalPowerResultsEnrichmentRates
html
ConditionalPowerResultsMeans html
ConditionalPowerResultsRates html
ConditionalPowerResultsSurvival html
Dataset html
DatasetMeans html
DatasetRates html
DatasetSurvival html
EventProbabilities html
FieldSet html
NumberOfSubjects html
ParameterSet html
PerformanceScore html
PiecewiseSurvivalTime html
PlotSettings html
PowerAndAverageSampleNumberResult html
SimulationResults html
SimulationResultsCountData html
SimulationResultsEnrichmentMeans html
SimulationResultsEnrichmentRates html
SimulationResultsEnrichmentSurvival html
SimulationResultsMeans html
SimulationResultsMultiArmMeans html
SimulationResultsMultiArmRates html
SimulationResultsMultiArmSurvival html
SimulationResultsRates html
SimulationResultsSurvival html
StageResults html
StageResultsEnrichmentMeans html
StageResultsEnrichmentRates html
StageResultsEnrichmentSurvival html
StageResultsMeans html
StageResultsMultiArmMeans html
StageResultsMultiArmRates html
StageResultsMultiArmSurvival html
StageResultsRates html
StageResultsSurvival html
SummaryFactory html
TrialDesign html
TrialDesignCharacteristics html
TrialDesignConditionalDunnett html
TrialDesignFisher html
TrialDesignGroupSequential html
TrialDesignInverseNormal html
TrialDesignPlan html
TrialDesignPlanCountData html
TrialDesignPlanMeans html
TrialDesignPlanRates html
TrialDesignPlanSurvival html
TrialDesignSet html
as.data.frame.AnalysisResults html
as.data.frame.ParameterSet html
as.data.frame.PowerAndAverageSampleNumberResult
html
as.data.frame.StageResults html
as.data.frame.TrialDesign html
as.data.frame.TrialDesignCharacteristics
html
as.data.frame.TrialDesignPlan html
as.data.frame.TrialDesignSet html
as.matrix.FieldSet html
as251Normal html
as251StudentT html
dataEnrichmentMeans html
dataEnrichmentMeansStratified html
dataEnrichmentRates html
dataEnrichmentRatesStratified html
dataEnrichmentSurvival html
dataEnrichmentSurvivalStratified html
dataMeans html
dataMultiArmMeans html
dataMultiArmRates html
dataMultiArmSurvival html
dataRates html
dataSurvival html
fetch.ParameterSet html
getAccrualTime html
getAnalysisResults html
getAvailablePlotTypes html
getClosedCombinationTestResults html
getClosedConditionalDunnettTestResults
html
getConditionalPower html
getConditionalRejectionProbabilities html
getData html
getDataset html
getDesignCharacteristics html
getDesignConditionalDunnett html
getDesignFisher html
getDesignGroupSequential html
getDesignInverseNormal html
getDesignSet html
getEventProbabilities html
getFinalConfidenceInterval html
getFinalPValue html
getGroupSequentialProbabilities html
getLambdaStepFunction html
getLogLevel html
getLongFormat html
getNumberOfSubjects html
getObjectRCode html
getObservedInformationRates html
getOutputFormat html
getParameterCaption html
getParameterName html
getParameterType html
getPerformanceScore html
getPiecewiseSurvivalTime html
getPlotSettings html
getPowerAndAverageSampleNumber html
getPowerCounts html
getPowerMeans html
getPowerRates html
getPowerSurvival html
getRawData html
getRepeatedConfidenceIntervals html
getRepeatedPValues html
getSampleSizeCounts html
getSampleSizeMeans html
getSampleSizeRates html
getSampleSizeSurvival html
getSimulationCounts html
getSimulationEnrichmentMeans html
getSimulationEnrichmentRates html
getSimulationEnrichmentSurvival html
getSimulationMeans html
getSimulationMultiArmMeans html
getSimulationMultiArmRates html
getSimulationMultiArmSurvival html
getSimulationRates html
getSimulationSurvival html
getStageResults html
getTestActions html
getWideFormat html
kableParameterSet html
knit_print.FieldSet html
knit_print.ParameterSet html
knit_print.SummaryFactory html
length.TrialDesignSet html
mvnprd html
mvstud html
names.AnalysisResults html
names.FieldSet html
names.SimulationResults html
names.StageResults html
names.TrialDesignSet html
param_accrualIntensity html
param_accrualIntensityType html
param_accrualIntensity_counts html
param_accrualTime html
param_accrualTime_counts html
param_activeArms html
param_adaptations html
param_allocationRatioPlanned html
param_allocationRatioPlanned_sampleSize
html
param_alpha html
param_alternative html
param_alternative_simulation html
param_beta html
param_bindingFutility html
param_calcEventsFunction html
param_calcSubjectsFunction html
param_conditionalPower html
param_conditionalPowerSimulation html
param_dataInput html
param_design html
param_design_with_default html
param_digits html
param_directionUpper html
param_dropoutRate1 html
param_dropoutRate2 html
param_dropoutTime html
param_effectList html
param_effectMatrix html
param_effectMeasure html
param_epsilonValue html
param_eventTime html
param_fixedExposureTime_counts html
param_followUpTime_counts html
param_gED50 html
param_grid html
param_groups html
param_hazardRatio html
param_includeAllParameters html
param_informationEpsilon html
param_informationRates html
param_intersectionTest_Enrichment html
param_intersectionTest_MultiArm html
param_kMax html
param_kappa html
param_lambda1 html
param_lambda1_counts html
param_lambda2 html
param_lambda2_counts html
param_lambda_counts html
param_legendPosition html
param_maxInformation html
param_maxNumberOfEventsPerStage html
param_maxNumberOfIterations html
param_maxNumberOfSubjects html
param_maxNumberOfSubjectsPerStage html
param_maxNumberOfSubjects_survival html
param_median1 html
param_median2 html
param_minNumberOfEventsPerStage html
param_minNumberOfSubjectsPerStage html
param_nMax html
param_nPlanned html
param_niceColumnNamesEnabled html
param_normalApproximation html
param_overdispersion_counts html
param_palette html
param_pi1_rates html
param_pi1_survival html
param_pi2_rates html
param_pi2_survival html
param_piecewiseSurvivalTime html
param_plannedCalendarTime html
param_plannedEvents html
param_plannedSubjects html
param_plotPointsEnabled html
param_plotSettings html
param_populations html
param_rValue html
param_seed html
param_selectArmsFunction html
param_selectPopulationsFunction html
param_showSource html
param_showStatistics html
param_sided html
param_slope html
param_stDev html
param_stDevH1 html
param_stDevSimulation html
param_stage html
param_stageResults html
param_stratifiedAnalysis html
param_successCriterion html
param_theta html
param_thetaH0 html
param_thetaH1 html
param_theta_counts html
param_three_dots html
param_three_dots_plot html
param_threshold html
param_tolerance html
param_typeOfComputation html
param_typeOfDesign html
param_typeOfSelection html
param_typeOfShape html
param_userAlphaSpending html
param_varianceOption html
plot.AnalysisResults html
plot.Dataset html
plot.EventProbabilities html
plot.NumberOfSubjects html
plot.ParameterSet html
plot.SimulationResults html
plot.StageResults html
plot.SummaryFactory html
plot.TrialDesign html
plot.TrialDesignPlan html
plot.TrialDesignSet html
plot.TrialDesignSummaries html
print.Dataset html
print.FieldSet html
print.ParameterSet html
print.SimulationResults html
print.SummaryFactory html
print.TrialDesignCharacteristics html
print.TrialDesignSummaries html
printCitation html
rawDataTwoArmNormal html
readDataset html
readDatasets html
resetLogLevel html
rpact html
setLogLevel html
setOutputFormat html
summary.AnalysisResults html
summary.Dataset html
summary.ParameterSet html
summary.TrialDesignSet html
testPackage html
test_plan_section html
utilitiesForPiecewiseExponentialDistribution
html
utilitiesForSurvivalTrials html
writeDataset html
writeDatasets html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rpact)