* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘robustlmm’ ...
** package ‘robustlmm’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5kZBj1/R.INSTALL22e8a465bb255a/robustlmm/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Integration.cpp -o Integration.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PsiFunction.cpp -o PsiFunction.o
In file included from /usr/include/c++/14/bits/specfun.h:43,
from /usr/include/c++/14/cmath:3898,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/platform/compiler.h:100,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:66,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
from PsiFunction.h:4,
from PsiFunction.cpp:1:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const double; _Up = double; bool _IsMove = false]’,
inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:651:7,
inlined from ‘void RobustbasePsi::initialiseTuningParametersFromDefaults()’ at PsiFunction.cpp:462:12:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c local_stubs.c -o local_stubs.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rlmerMatrixUtils.cpp -o rlmerMatrixUtils.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/robustbase/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Matrix/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c robustlmm_init.cpp -o robustlmm_init.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o robustlmm.so Integration.o PsiFunction.o local_stubs.o misc.o rlmerMatrixUtils.o robustlmm_init.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5kZBj1/R.INSTALL22e8a465bb255a/robustlmm/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5kZBj1/R.INSTALL22e8a465bb255a/robustlmm/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5kZBj1/R.INSTALL22e8a465bb255a/robustlmm/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-robustlmm/00new/robustlmm/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘robustlmm’
finding HTML links ... done
asymptoticEfficiency html
bindDatasets html
chgDefaults html
compare html
finding level-2 HTML links ... done
createDatasetsFromList html
createRhoFunction html
extractTuningParameter html
fitDatasets html
generateAnovaDatasets html
generateMixedEffectDatasets html
generateSensitivityCurveDatasets html
getME html
lapplyDatasets html
loadAndMergePartialResults html
mergeProcessedFits html
other html
partialMoment_standardNormal html
plot-methods html
plot.rlmerMod html
prepareMixedEffectDataset html
processDatasetsInParallel html
processFile html
processFit html
psi-functions html
psi2propII html
residuals.rlmerMod html
rlmer html
rlmerMod-class html
robustlmm-package html
saveDatasets html
shortenLabelsKS2022 html
splitDatasets html
viewCopyOfSimulationStudy html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (robustlmm)