* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘riskRegression’ ...
** package ‘riskRegression’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5acc3e/R.INSTALL205872673c7720/riskRegression/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c IC-Nelson-Aalen-cens-time.cpp -o IC-Nelson-Aalen-cens-time.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c aucCVFun.cpp -o aucCVFun.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c baseHaz.cpp -o baseHaz.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcSeCSC.cpp -o calcSeCSC.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calcSeCox.cpp -o calcSeCox.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c calculateDelongCovarianceMatrix.cpp -o calculateDelongCovarianceMatrix.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c colCumSum.cpp -o colCumSum.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c confBand.cpp -o confBand.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c getInfluenceFunctionAUC.cpp -o getInfluenceFunctionAUC.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c getInfluenceFunctionBrier.cpp -o getInfluenceFunctionBrier.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c iidCox.cpp -o iidCox.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c predictCIF.cpp -o predictCIF.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rowCumSum.cpp -o rowCumSum.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rowSumsCrossprod.cpp -o rowSumsCrossprod.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c sweepCenterScale.cpp -o sweepCenterScale.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c weightedAverageIFCumhazard.cpp -o weightedAverageIFCumhazard.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o riskRegression.so IC-Nelson-Aalen-cens-time.o RcppExports.o aucCVFun.o baseHaz.o calcSeCSC.o calcSeCox.o calculateDelongCovarianceMatrix.o colCumSum.o confBand.o getInfluenceFunctionAUC.o getInfluenceFunctionBrier.o iidCox.o predictCIF.o rowCumSum.o rowSumsCrossprod.o sweepCenterScale.o weightedAverageIFCumhazard.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5acc3e/R.INSTALL205872673c7720/riskRegression/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5acc3e/R.INSTALL205872673c7720/riskRegression/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5acc3e/R.INSTALL205872673c7720/riskRegression/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-riskRegression/00new/riskRegression/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘riskRegression’
    finding HTML links ... done
    CSC                                     html  
    Cforest                                 html  
    Ctree                                   html  
    FGR                                     html  
    finding level-2 HTML links ... done

    GLMnet                                  html  
    Hal9001                                 html  
    IPA                                     html  
    Melanoma                                html  
    Paquid                                  html  
    Score                                   html  
    SmcFcs                                  html  
    SuperPredictor                          html  
    SurvResponseVar                         html  
    anova.ate                               html  
    as.data.table.ate                       html  
    as.data.table.influenceTest             html  
    as.data.table.predictCSC                html  
    as.data.table.predictCox                html  
    ate                                     html  
    autoplot.Score                          html  
    autoplot.ate                            html  
    autoplot.predictCSC                     html  
    autoplot.predictCox                     html  
    baseHaz_cpp                             html  
    boot2pvalue                             html  
    boxplot.Score                           html  
    calcSeCSC                               html  
    calcSeCox                               html  
    coef.CauseSpecificCox                   html  
    coef.riskRegression                     html  
    colCenter_cpp                           html  
    colCumSum                               html  
    colMultiply_cpp                         html  
    colScale_cpp                            html  
    confint.ate                             html  
    confint.influenceTest                   html  
    confint.predictCSC                      html  
    confint.predictCox                      html  
    coxBaseEstimator                        html  
    coxCenter                               html  
    coxFormula                              html  
    coxLP                                   html  
    coxModelFrame                           html  
    coxN                                    html  
    coxSpecial                              html  
    coxStrata                               html  
    coxStrataLevel                          html  
    coxVarCov                               html  
    coxVariableName                         html  
    dicreteRoot                             html  
    getSplitMethod                          html  
    iid.wglm                                html  
    iidCox                                  html  
    influenceTest                           html  
    information.wglm                        html  
    ipcw                                    html  
    model.matrix.cph                        html  
    model.matrix.phreg                      html  
    penalizedS3                             html  
    plot.riskRegression                     html  
    plotAUC                                 html  
    plotBrier                               html  
    plotCalibration                         html  
    plotEffects                             html  
    plotPredictRisk                         html  
    plotROC                                 html  
    plotRisk                                html  
    predict.CauseSpecificCox                html  
    predict.FGR                             html  
    predict.riskRegression                  html  
    predictCox                              html  
    predictCoxPL                            html  
    predictRisk                             html  
    print.CauseSpecificCox                  html  
    print.FGR                               html  
    print.IPA                               html  
    print.Score                             html  
    print.ate                               html  
    print.influenceTest                     html  
    print.predictCSC                        html  
    print.predictCox                        html  
    print.riskRegression                    html  
    print.subjectWeights                    html  
    reconstructData                         html  
    riskLevelPlot                           html  
    riskRegression-package                  html  
    riskRegression                          html  
    riskRegression.options                  html  
    rowCenter_cpp                           html  
    rowCumSum                               html  
    rowMultiply_cpp                         html  
    rowPaste                                html  
    rowScale_cpp                            html  
    rowSumsCrossprod                        html  
    sampleData                              html  
    saveCoxConfidential                     html  
    score.wglm                              html  
    selectCox                               html  
    selectJump                              html  
    simActiveSurveillance                   html  
    simMelanoma                             html  
    simPBC                                  html  
    simsynth                                html  
    splitStrataVar                          html  
    subjectWeights                          html  
    subsetIndex                             html  
    summary.FGR                             html  
    summary.Score                           html  
    summary.ate                             html  
    summary.riskRegression                  html  
    synthesize                              html  
    terms.phreg                             html  
    transformCIBP                           html  
    wglm                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (riskRegression)