* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘regmed’ ...
** package ‘regmed’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEOYM2q/R.INSTALL406e45ca5e20a/regmed/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mvregmed.cpp -o mvregmed.o
mvregmed.cpp: In function ‘arma::mat col_outerprod_row(arma::mat&, arma::mat&, int, int)’:
mvregmed.cpp:127:9: warning: unused variable ‘ncolA’ [-Wunused-variable]
127 | int ncolA = A.n_cols;
| ^~~~~
mvregmed.cpp:129:9: warning: unused variable ‘nrowB’ [-Wunused-variable]
129 | int nrowB = B.n_rows;
| ^~~~~
mvregmed.cpp: In function ‘int count_df(arma::mat&)’:
mvregmed.cpp:464:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
464 | for (int i = 0; i < A.n_rows; i++) {
| ~~^~~~~~~~~~
mvregmed.cpp:465:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
465 | for (int j = 0; j < A.n_cols; j++) {
| ~~^~~~~~~~~~
mvregmed.cpp: In function ‘int count_df_Vary(arma::mat&)’:
mvregmed.cpp:477:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
477 | for (int i = 0; i < V.n_rows; i++) {
| ~~^~~~~~~~~~
mvregmed.cpp:478:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
478 | for (int j = i; j < V.n_cols; j++) {
| ~~^~~~~~~~~~
mvregmed.cpp: In function ‘void print_vec(arma::vec)’:
mvregmed.cpp:617:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
617 | for(int i = 0; i < x.size(); i++){
| ~~^~~~~~~~~~
mvregmed.cpp: In function ‘Rcpp::List rcpp_mvregmed(arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, arma::mat, double, double, int, int, double, double, double, bool)’:
mvregmed.cpp:773:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
773 | for (int i_alpha = 0; i_alpha < alpha.n_rows; i_alpha++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:774:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
774 | for (int j_alpha = 0; j_alpha < alpha.n_cols; j_alpha++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:880:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
880 | for (int i_beta = 0; i_beta < beta.n_rows; i_beta++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:881:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
881 | for (int j_beta = 0; j_beta < beta.n_cols; j_beta++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:981:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
981 | for (int i_delta = 0; i_delta < delta.n_rows; i_delta++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:982:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
982 | for (int j_delta = 0; j_delta < delta.n_cols; j_delta++) {
| ~~~~~~~~^~~~~~~~~~~~~~
mvregmed.cpp:1080:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1080 | for (int i_vary = 0; i_vary < vary.n_rows; i_vary++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:1081:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1081 | for (int j_vary = i_vary; j_vary < vary.n_cols; j_vary++) {
| ~~~~~~~^~~~~~~~~~~~~
mvregmed.cpp:696:10: warning: unused variable ‘pen_loss_end’ [-Wunused-variable]
696 | double pen_loss_end = 0.0;
| ^~~~~~~~~~~~
mvregmed.cpp:723:7: warning: unused variable ‘nt’ [-Wunused-variable]
723 | int nt = vary.n_rows;
| ^~
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c regmed.cpp -o regmed.o
regmed.cpp: In function ‘arma::mat compute_B(arma::vec&, arma::vec&, double)’:
regmed.cpp:234:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
234 | for(int i = 0; i < B.n_rows; i++){
| ~~^~~~~~~~~~
regmed.cpp:244:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
244 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘arma::mat inverse_ImpCov(arma::vec&, arma::vec&, double, arma::mat&)’:
regmed.cpp:269:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
269 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘arma::vec update_theta(arma::vec&, arma::vec&, double, double, double)’:
regmed.cpp:325:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
325 | for(int i = 0; i < diff.size(); i++){
| ~~^~~~~~~~~~~~~
regmed.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
334 | for(int i = 0; i < diff.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp:338:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
338 | for(int i = 0; i < diff.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘double penalty(arma::vec&, arma::vec&, double, double, double, double)’:
regmed.cpp:369:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
369 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp: In function ‘Rcpp::List rcpp_regmed(arma::vec, arma::vec, double, double, double, arma::mat, arma::mat, double, double, double, double, int, int, double, double, double, bool)’:
regmed.cpp:759:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
759 | for(int i = 0; i < alpha.size(); i++){
| ~~^~~~~~~~~~~~~~
regmed.cpp:501:10: warning: unused variable ‘varx_old’ [-Wunused-variable]
501 | double varx_old = 0.0;
| ^~~~~~~~
regmed.cpp:502:10: warning: unused variable ‘varx_new’ [-Wunused-variable]
502 | double varx_new = 0.0;
| ^~~~~~~~
regmed.cpp:503:10: warning: unused variable ‘varx_diff’ [-Wunused-variable]
503 | double varx_diff = 0.0;
| ^~~~~~~~~
regmed.cpp:507:10: warning: unused variable ‘vary_diff’ [-Wunused-variable]
507 | double vary_diff = 0.0;
| ^~~~~~~~~
regmed.cpp:514:10: warning: unused variable ‘pen_loss_end’ [-Wunused-variable]
514 | double pen_loss_end = 0.0;
| ^~~~~~~~~~~~
regmed.cpp:526:10: warning: unused variable ‘grad_varx’ [-Wunused-variable]
526 | double grad_varx = 0.0;
| ^~~~~~~~~
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o regmed.so RcppExports.o mvregmed.o regmed.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEOYM2q/R.INSTALL406e45ca5e20a/regmed/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEOYM2q/R.INSTALL406e45ca5e20a/regmed/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEOYM2q/R.INSTALL406e45ca5e20a/regmed/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-regmed/00new/regmed/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘regmed’
finding HTML links ... done
medsim html
mvregmed.dat.check html
mvregmed.edges html
mvregmed.fit html
mvregmed.graph.attributes html
finding level-2 HTML links ... done
mvregmed.grid html
mvregmed.grid.bestfit html
mvregmed.grid.data html
mvregmed.grid.update html
mvregmed.init html
mvregmed.lavaan.dat html
mvregmed.lavaan.model html
plot.mvregmed.grid html
plot.regmed.grid html
regmed-package html
regmed.edges html
regmed.fit html
regmed.grid html
regmed.grid.bestfit html
regmed.lavaan.dat html
regmed.lavaan.model html
regmed.prefilter html
summary.mvregmed html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (regmed)