* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘rcdk’ ... ** package ‘rcdk’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘rcdk’ finding HTML links ... done Atoms html Molecule html bpdata html cdk.version html cdkFormula-class html compare.isotope.pattern html convert.implicit.to.explicit html copy.image.to.clipboard html do.aromaticity html do.isotopes html eval.atomic.desc html eval.desc html generate.2d.coordinates html generate.formula html generate.formula.iter html get.adjacency.matrix html get.alogp html get.atom.count html get.atom.index html get.atomic.desc.names html get.atomic.number html get.atoms html get.bond.order html get.bonds html get.charge html get.chem.object.builder html get.connected.atom html get.connected.atoms html get.connection.matrix html get.depictor html get.desc.categories html get.desc.names html get.element.types html get.exact.mass html get.exhaustive.fragments html get.fingerprint html finding level-2 HTML links ... done get.formal.charge html get.formula html get.hydrogen.count html get.isotope.pattern.generator html get.isotope.pattern.similarity html get.isotopes.pattern html get.largest.component html get.mcs html get.mol2formula html get.murcko.fragments html get.natural.mass html get.point2d html get.point3d html get.properties html get.property html get.smiles html get.smiles.parser html get.stereo.types html get.stereocenters html get.symbol html get.title html get.total.charge html get.total.formal.charge html get.total.hydrogen.count html get.tpsa html get.volume html get.xlogp html iload.molecules html is.aliphatic html is.aromatic html is.connected html is.in.ring html is.neutral html isvalid.formula html load.molecules html matches html parse.smiles html rcdk-deprecated html remove.hydrogens html remove.property html set.atom.types html set.charge.formula html set.property html set.title html smiles.flavors html view.image.2d html view.molecule.2d html view.table html write.molecules html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcdk)