* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ratematrix’ ... ** package ‘ratematrix’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYXj1fp/R.INSTALL1809342303ecd0/ratematrix/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MultRegimeMCMC.cpp -o MultRegimeMCMC.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I../inst/include -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ratematrix.so MultRegimeMCMC.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYXj1fp/R.INSTALL1809342303ecd0/ratematrix/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYXj1fp/R.INSTALL1809342303ecd0/ratematrix/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYXj1fp/R.INSTALL1809342303ecd0/ratematrix/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ratematrix/00new/ratematrix/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ratematrix’ finding HTML links ... done anoles html centrarchidae html checkConvergence html computeESS html continueMCMC html estimateTimeMCMC html extractCorrelation html fastSimmap html getStartPointFromPosterior html likelihoodFunction html logAnalyzer html makePrior html mergePosterior html mergeSimmap html plotPrior html plotRatematrix html plotRootValue html print.ratematrix_multi_chain html print.ratematrix_multi_mcmc html print.ratematrix_prior_function html print.ratematrix_prior_sample html print.ratematrix_single_chain html print.ratematrix_single_mcmc html ratematrix html ratematrixJointMCMC html ratematrixMCMC html readMCMC html readMCMC_Mk html samplePrior html simRatematrix html testRatematrix html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ratematrix)