* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘qcluster’ ...
** package ‘qcluster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaC4mcm/R.INSTALL3fdbe6deea694/qcluster/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rsample_from.c -o Rsample_from.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c alloc_utils.c -o alloc_utils.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cluster_to_triplets.c -o cluster_to_triplets.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ecm.c -o ecm.o
ecm.c: In function ‘ECM’:
ecm.c:90:9: warning: ‘iter’ may be used uninitialized [-Wmaybe-uninitialized]
90 | int iter = 0;
| ^~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ecm_winit.c -o ecm_winit.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gss.c -o gss.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c helper_score_smd.c -o helper_score_smd.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kmedians.c -o kmedians.o
kmedians.c: In function ‘kmedians’:
kmedians.c:137:5: warning: ‘assigned_cluster’ may be used uninitialized [-Wmaybe-uninitialized]
137 | free(assigned_cluster);
| ^~~~~~~~~~~~~~~~~~~~~~
kmedians.c:90:10: note: ‘assigned_cluster’ was declared here
90 | int *assigned_cluster = malloc(N * sizeof(int)); /* Store cluster memberships */
| ^~~~~~~~~~~~~~~~
kmedians.c:142:12: warning: ‘cost[0]’ may be used uninitialized [-Wmaybe-uninitialized]
142 | if (!(cost[0] < INFINITY))
| ^
kmedians.c:103:12: note: ‘cost[0]’ was declared here
103 | double cost[2];
| ^~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quickselect.c -o quickselect.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c score_hard.c -o score_hard.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c score_hard_cluster.c -o score_hard_cluster.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c score_smooth.c -o score_smooth.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c score_smooth_cluster.c -o score_smooth_cluster.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o qcluster.so Rsample_from.o alloc_utils.o cluster_to_triplets.o ecm.o ecm_winit.o gss.o helper_score_smd.o init.o kmedians.o quickselect.o score_hard.o score_hard_cluster.o score_smooth.o score_smooth_cluster.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaC4mcm/R.INSTALL3fdbe6deea694/qcluster/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpaC4mcm/R.INSTALL3fdbe6deea694/qcluster/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpaC4mcm/R.INSTALL3fdbe6deea694/qcluster/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-qcluster/00new/qcluster/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘qcluster’
finding HTML links ... done
banknote html
bqs html
bqs_rank html
bqs_select html
clust2params html
gmix html
mbind html
mset_gmix html
mset_kmeans html
mset_pam html
mset_user html
plot_bqs html
plot_clustering html
plot_mbcfit html
predict_mbcfit html
print_bqs html
print_mbcfit html
qscore html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (qcluster)