* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘psSubpathway’ ...
** package ‘psSubpathway’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/tmp/RtmpJgLeol/R.INSTALL26121f3639d9da/psSubpathway/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kernel_estimation.c -o kernel_estimation.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ks_test.c -o ks_test.o
ks_test.c: In function ‘ks_sample’:
ks_test.c:24:16: warning: unused variable ‘mx_value’ [-Wunused-variable]
   24 |         double mx_value = 0.0;
      |                ^~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c psSubpathway_init.c -o psSubpathway_init.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o psSubpathway.so kernel_estimation.o ks_test.o psSubpathway_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpJgLeol/R.INSTALL26121f3639d9da/psSubpathway/src'
make[1]: Entering directory '/tmp/RtmpJgLeol/R.INSTALL26121f3639d9da/psSubpathway/src'
make[1]: Leaving directory '/tmp/RtmpJgLeol/R.INSTALL26121f3639d9da/psSubpathway/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-psSubpathway/00new/psSubpathway/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘psSubpathway’
    finding HTML links ... done
    DCSA                                    html  
    FastSEAscore                            html  
    ReadClsFile                             html  
    SEAscore                                html  
    SubSEA                                  html  
    compute_rank_score                      html  
    envData                                 html  
    getgenedensity                          html  
    isPackageLoaded                         html  
    ks_test_m                               html  
    plotSpwACmap                            html  
    plotSpwNetmap                           html  
    plotSpwPSheatmap                        html  
    plotSubSEScurve                         html  
    plotheatmap                             html  
    rndWalk                                 html  
    ssgsea                                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (psSubpathway)