* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘protViz’ ...
** package ‘protViz’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpywOqmM/R.INSTALL1483aa6dec5e12/protViz/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c protViz_init.c -o protViz_init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c deisotoper.cpp -o deisotoper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c aa2mass.cpp -o aa2mass.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c findNN_.cpp -o findNN_.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c computeFragmentIons.c -o computeFragmentIons.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c computeParentIonMass.c -o computeParentIonMass.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c findNN.c -o findNN.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I. -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c fasta.cpp -o fasta.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o protViz.so protViz_init.o deisotoper.o aa2mass.o findNN_.o computeFragmentIons.o computeParentIonMass.o findNN.o RcppExports.o fasta.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpywOqmM/R.INSTALL1483aa6dec5e12/protViz/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpywOqmM/R.INSTALL1483aa6dec5e12/protViz/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpywOqmM/R.INSTALL1483aa6dec5e12/protViz/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-protViz/00new/protViz/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** exec
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘protViz’
    finding HTML links ... done
    AA                                      html  
    ADPR                                    html  
    HexNAc                                  html  
    PTM_MarkerFinder                        html  
    PTM_MarkerFinder_util                   html  
    aa2mass                                 html  
    assignPlatePosition                     html  
    averagine                               html  
    blockRandom                             html  
    centroid                                html  
    de_novo                                 html  
    deisotoper                              html  
    fasta                                   html  
    fetuinLFQ                               html  
    findNN                                  html  
    fragmentIons                            html  
    genMod                                  html  
    iRTpeptides                             html  
    iTRAQ                                   html  
    iTRAQ2GroupAnalysis                     html  
    insertSamples                           html  
    lcmsmap                                 html  
    mascot                                  html  
    mdp                                     html  
    msms                                    html  
    parentIonMass                           html  
    peakplot                                html  
    pgImporter                              html  
    pgLFQaov                                html  
    pgLFQfeature                            html  
    pgLFQprot                               html  
    pgLFQtNpq                               html  
    ppp                                     html  
    pps                                     html  
    pressureProfile                         html  
    psm                                     html  
    psmSet                                  html  
    ssrc                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (protViz)