* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘phenex’ ...
** package ‘phenex’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptQLE3d/R.INSTALL2d87e77255c8d8/phenex/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c analyzeBits.c -o analyzeBits.o
analyzeBits.c: In function ‘getBits’:
analyzeBits.c:26:13: warning: unused variable ‘erg’ [-Wunused-variable]
   26 |         int erg;
      |             ^~~
analyzeBits.c: In function ‘getLandWater’:
analyzeBits.c:36:13: warning: unused variable ‘erg’ [-Wunused-variable]
   36 |         int erg;
      |             ^~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c condition.c -o condition.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c date2doy.c -o date2doy.o
date2doy.c: In function ‘isLeap’:
date2doy.c:56:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
   56 |         if (year % 4 == 0)
      |            ^
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c phenex.c -o phenex.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c quicksort.c -o quicksort.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ravg.c -o ravg.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c savgol.c -o savgol.o
savgol.c: In function ‘savGol’:
savgol.c:8:19: warning: unused variable ‘h’ [-Wunused-variable]
    8 |         int days, h=21, i, j, count, step, position, errorflag=0;
      |                   ^
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sigmoid.c -o sigmoid.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o phenex.so analyzeBits.o condition.o date2doy.o phenex.o quicksort.o ravg.o savgol.o sigmoid.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptQLE3d/R.INSTALL2d87e77255c8d8/phenex/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptQLE3d/R.INSTALL2d87e77255c8d8/phenex/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptQLE3d/R.INSTALL2d87e77255c8d8/phenex/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-phenex/00new/phenex/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘phenex’
    finding HTML links ... done
    NDVI-class                              html  
    analyzeBits                             html  
    avhrr                                   html  
    avhrrcomp                               html  
    bise                                    html  
    correctedValues                         html  
    date2doy                                html  
    detectSeasons                           html  
    integrateTimeserie                      html  
    leapYears                               html  
    modelNDVI                               html  
    modelValues                             html  
    modelledValues                          html  
    modis                                   html  
    modiscomp                               html  
    phenoPhase                              html  
    rsquare                                 html  
    runningAvg                              html  
    seasons                                 html  
    values                                  html  
    yearlength                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (phenex)