* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pec’ ...
** this is package ‘pec’ version ‘2023.04.12’
** package ‘pec’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpthZyDr/R.INSTALL33db6275faf57d/pec/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SNull.c -o SNull.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c auc.c -o auc.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c brier_score.c -o brier_score.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ccr.c -o ccr.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c cindex.c -o cindex.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pec.c -o pec.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pecResiduals.c -o pecResiduals.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c survest_cox_aalen.c -o survest_cox_aalen.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o pec.so SNull.o auc.o brier_score.o ccr.o cindex.o init.o pec.o pecResiduals.o survest_cox_aalen.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpthZyDr/R.INSTALL33db6275faf57d/pec/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpthZyDr/R.INSTALL33db6275faf57d/pec/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpthZyDr/R.INSTALL33db6275faf57d/pec/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-pec/00new/pec/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘pec’
    finding HTML links ... done
    GBSG2                                   html  
    Pbc3                                    html  
    R2                                      html  
    Special                                 html  
    calPlot                                 html  
Rd warning: calPlot.Rd:182: missing link ‘SmartControl’
Rd warning: calPlot.Rd:194: missing link ‘dpik’
    cindex                                  html  
    cost                                    html  
    coxboost                                html  
Rd warning: coxboost.Rd:14: missing link ‘Hist’
    crps                                    html  
    ipcw                                    html  
    pec                                     html  
    pecCforest                              html  
    pecCtree                                html  
    pecRpart                                html  
    plot.calibrationPlot                    html  
    plot.pec                                html  
Rd warning: plot.pec.Rd:156: missing link ‘prodlim’
    plotPredictEventProb                    html  
Rd warning: plotPredictEventProb.Rd:66: missing link ‘SmartControl’
Rd warning: plotPredictEventProb.Rd:107: missing link ‘prodlim’
    plotPredictSurvProb                     html  
Rd warning: plotPredictSurvProb.Rd:64: missing link ‘SmartControl’
Rd warning: plotPredictSurvProb.Rd:110: missing link ‘prodlim’
    predictEventProb                        html  
    predictLifeYearsLost                    html  
    predictRestrictedMeanTime               html  
Rd warning: predictRestrictedMeanTime.Rd:119: missing link ‘survfit’
    predictSurvProb                         html  
Rd warning: predictSurvProb.Rd:141: missing link ‘survfit’
    print.pec                               html  
    reclass                                 html  
    resolvesplitMethod                      html  
    selectCox                               html  
Rd warning: selectCox.Rd:15: missing link ‘fastbw’
    simCost                                 html  
    threecity                               html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pec)