* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘pafr’ ...
** this is package ‘pafr’ version ‘0.0.2’
** package ‘pafr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘pafr’
    finding HTML links ... done
    Gb_lab                                  html  
Rd warning: Gb_lab.Rd:22: missing link ‘ggplot2’
    as_paf                                  html  
    chrom_sizes                             html  
    dotplot                                 html  
    filter_secondary_alignments             html  
    highlight_dotplot                       html  
    plot_coverage                           html  
Rd warning: plot_coverage.Rd:25: missing link ‘ggplot2’
    plot_synteny                            html  
    read_bed                                html  
    read_paf                                html  
    theme_coverage_plot                     html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pafr)