* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘opa’ ...
** package ‘opa’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
using C++17
make[1]: Entering directory '/tmp/RtmpJa3QbY/R.INSTALL11aa956092abba/opa/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp_functions.cpp -o cpp_functions.o
cpp_functions.cpp: In function ‘Rcpp::List calc_cvalues(Rcpp::List, int, bool)’:
cpp_functions.cpp:224:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  224 |     for (size_t i {0}; i < nreps; i++) {
      |                        ~~^~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o opa.so RcppExports.o cpp_functions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpJa3QbY/R.INSTALL11aa956092abba/opa/src'
make[1]: Entering directory '/tmp/RtmpJa3QbY/R.INSTALL11aa956092abba/opa/src'
make[1]: Leaving directory '/tmp/RtmpJa3QbY/R.INSTALL11aa956092abba/opa/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-opa/00new/opa/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘opa’
    finding HTML links ... done
    bees                                    html  
    compare_conditions                      html  
    compare_groups                          html  
    compare_hypotheses                      html  
    correct_pairs                           html  
    cval_plot                               html  
    group_cvals                             html  
    group_pccs                              html  
    group_results                           html  
    hypothesis                              html  
    incorrect_pairs                         html  
    individual_cvals                        html  
    individual_pccs                         html  
    individual_results                      html  
    opa                                     html  
    pcc_plot                                html  
    pituitary                               html  
    plot.opaGroupComparison                 html  
    plot.opaHypothesisComparison            html  
    plot.opafit                             html  
    plot.opahypothesis                      html  
    plot.oparandpccs                        html  
    print.opaGroupComparison                html  
    print.opaHypothesisComparison           html  
    print.opafit                            html  
    print.opahypothesis                     html  
    print.pairwiseopafit                    html  
    random_pccs                             html  
    summary.opaGroupComparison              html  
    summary.opaHypothesisComparison         html  
    summary.opafit                          html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (opa)