* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘omicsTools’ ...
** this is package ‘omicsTools’ version ‘1.1.7’
** package ‘omicsTools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘omicsTools’
    finding HTML links ... done
    OmicsData-class                         html  
    calculate_cooks_distance                html  
    calculate_lof                           html  
    calculate_measures                      html  
    calculate_qc_rsd                        html  
    check_and_sort_columns                  html  
    check_match                             html  
    combine_logical_tibbles                 html  
    convert_mrm_data                        html  
    convert_to_binary_matrix                html  
    createOmicsData                         html  
    define_thresholds                       html  
    detect_duplicates                       html  
    ensure_enough_sets_for_upset            html  
    flag_anomalies                          html  
    flag_underexpressed_features            html  
    generate_data_with_anomalies            html  
    generate_process_report                 html  
    handle_missing_values                   html  
    initialize_results_df                   html  
    internal_standard_normalize             html  
    load_parse_sciex_txt                    html  
    ms1_annotation                          html  
    perform_batch_assessment                html  
    perform_feature_selection               html  
    pieDraw                                 html  
    pipe                                    html  
    plot_distribution_measures              html  
    plot_lipid_data_summary                 html  
    plot_met_data_summary                   html  
    plot_sample_measures                    html  
    pqn_normalize                           html  
    prepare_upset_data                      html  
    process_mrm_duplicates                  html  
    pvcaDraw                                html  
    qc_normalize                            html  
    run_app                                 html  
    transpose_df                            html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (omicsTools)