* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nosoi’ ...
** package ‘nosoi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘nosoi’
    finding HTML links ... done
    CoreSanityChecks                        html  
    FunctionSanityChecks                    html  
    MatrixSanityChecks                      html  
    RasterSanityChecks                      html  
    SingleNone                              html  
    add_node_tip                            html  
    applyFunctionToHosts                    html  
    cumulativeInfected                      html  
    drawBernouilli                          html  
    dualContinuous                          html  
    dualDiscrete                            html  
    dualNone                                html  
    endMessage                              html  
    getCumulative                           html  
    getDynamic                              html  
    getExitingMoving                        html  
    getHostData                             html  
    getPositionInfected                     html  
    getR0                                   html  
    getTableHosts                           html  
    getTableState                           html  
    getTransmissionTree                     html  
    get_node                                html  
    get_other_count                         html  
    get_position                            html  
    get_state                               html  
    iniTable                                html  
    iniTableState                           html  
    keep.tip.treedata                       html  
    keepState                               html  
    makeMoves                               html  
    meetTransmit                            html  
    merge_host_tables                       html  
    moveFunction.continuous                 html  
    moveFunction.discrete                   html  
    moveRotateContinuous                    html  
    newLine                                 html  
    newLineState                            html  
    nosoiSim                                html  
    nosoiSimConstructor                     html  
    nosoiSimOneConstructor                  html  
    nosoiSummary                            html  
    numberInfected                          html  
    numberInfectedBGW                       html  
    numberInfectedStates                    html  
    paramConstructor                        html  
    parseFunction                           html  
    progressMessage                         html  
    sampleTransmissionTree                  html  
    sampleTransmissionTreeFromExiting       html  
    singleContinuous                        html  
    singleDiscrete                          html  
    updateHostCount                         html  
    updateTableState                        html  
    writeInfected                           html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nosoi)