* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘nlmixr2extra’ ...
** this is package ‘nlmixr2extra’ version ‘3.0.2’
** package ‘nlmixr2extra’ successfully unpacked and MD5 sums checked
** using staged installation
R version 4.5.2 beta (2025-10-20 r88955) -- "[Not] Part in a Rumble"
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Platform: x86_64-pc-linux-gnu
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Type 'license()' or 'licence()' for distribution details.
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> if (!dir.exists("data")) {
+ dir.create("data")
+ }
>
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> if (.Platform$OS.type == "windows") {
+ .makevars <- file("src/Makevars.win", "wb")
+ .i <- "I"
+ } else {
+ .makevars <- file("src/Makevars", "wb")
+ if (any(grepl("Pop!_OS", utils::osVersion, fixed=TRUE))) {
+ .i <- "isystem"
+ } else {
+ .i <- "I"
+ }
+ }
>
> writeLines(gsub("@ISYSTEM@", .i, .in),
+ .makevars)
> close(.makevars)
>
> proc.time()
user system elapsed
0.128 0.021 0.139
--------[begin src/Makevars]--------
## -*- mode: makefile; -*-
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -DARMA_USE_CXX11
PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS) $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
--------[end src/Makevars]--------
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-8) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxNf3A7/R.INSTALL1b0ab6108f052c/nlmixr2extra/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_CXX11 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -DARMA_USE_CXX11 -fpic -g -O2 -Wall -pedantic -mtune=native -c preCondInv.cpp -o preCondInv.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o nlmixr2extra.so RcppExports.o init.o preCondInv.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxNf3A7/R.INSTALL1b0ab6108f052c/nlmixr2extra/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxNf3A7/R.INSTALL1b0ab6108f052c/nlmixr2extra/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxNf3A7/R.INSTALL1b0ab6108f052c/nlmixr2extra/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-nlmixr2extra/00new/nlmixr2extra/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘nlmixr2extra’
finding HTML links ... done
adaptivelassoCoefficients html
addCatCovariates html
addorremoveCovariate html
adjustedlassoCoefficients html
bootplot html
bootstrapFit html
buildcovInfo html
buildupatedUI html
fixedControl html
foldgen html
horseshoeSummardf html
knit_print.nlmixr2FitCore html
lassoCoefficients html
lassoSummardf html
llpControl html
normalizedData html
optimUnisampling html
preconditionFit html
profile.nlmixr2FitCore html
profileFixed html
profileLlp html
profileNlmixr2FitCoreRet html
reexports html
regularmodel html
theoFitOde html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nlmixr2extra)