* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ncvreg’ ...
** package ‘ncvreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiZHzXd/R.INSTALL129083213f85ea/ncvreg/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cox-dh.c -o cox-dh.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussian.c -o gaussian.o
gaussian.c: In function ‘cdfit_gaussian’:
gaussian.c:118:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized]
118 | for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
gaussian.c:76:10: note: ‘cutoff’ was declared here
76 | double cutoff, l1, l2;
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c glm.c -o glm.o
glm.c: In function ‘cdfit_glm’:
glm.c:152:56: warning: ‘cutoff’ may be used uninitialized [-Wmaybe-uninitialized]
152 | for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
glm.c:91:42: note: ‘cutoff’ was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~~~~~
glm.c:200:24: warning: ‘si’ may be used uninitialized [-Wmaybe-uninitialized]
200 | max_change = fabs(si)*xwx/n;
| ^~~~~~~~
glm.c:91:65: note: ‘si’ was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxprod.c -o maxprod.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_binomial.c -o mfdr_binomial.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_cox.c -o mfdr_cox.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mfdr_gaussian.c -o mfdr_gaussian.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ncvreg_init.c -o ncvreg_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rawfit_gaussian.c -o rawfit_gaussian.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardize.c -o standardize.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ncvreg.so cox-dh.o gaussian.o glm.o maxprod.o mfdr_binomial.o mfdr_cox.o mfdr_gaussian.o ncvreg_init.o rawfit_gaussian.o standardize.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiZHzXd/R.INSTALL129083213f85ea/ncvreg/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiZHzXd/R.INSTALL129083213f85ea/ncvreg/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiZHzXd/R.INSTALL129083213f85ea/ncvreg/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ncvreg/00new/ncvreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ncvreg’
finding HTML links ... done
AUC html
Heart html
Lung html
Prostate html
cv.ncvreg html
local_mfdr html
logLik.ncvreg html
mfdr html
ncvfit html
ncvreg-package html
ncvreg html
ncvsurv html
perm.ncvreg html
permres html
plot.cv.ncvreg html
plot.mfdr html
plot.ncvreg html
plot.ncvsurv.func html
predict.ncvreg html
predict.ncvsurv html
residuals.ncvreg html
std html
summary.cv.ncvreg html
summary.ncvreg html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncvreg)