* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘myTAI’ ... ** package ‘myTAI’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLdtTNg/R.INSTALL1dcd4518e4921e/myTAI/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c myTAI_init.c -o myTAI_init.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I../src -DRCPP_DEFAULT_INCLUDE_CALL=false -DCOMPILING_MYTAI -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -DRCPP_USING_UTF8_ERROR_STRING -DRCPP_USE_UNWIND_PROTECT -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_funcs.cpp -o rcpp_funcs.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o myTAI.so RcppExports.o code.o myTAI_init.o rcpp_funcs.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLdtTNg/R.INSTALL1dcd4518e4921e/myTAI/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpLdtTNg/R.INSTALL1dcd4518e4921e/myTAI/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpLdtTNg/R.INSTALL1dcd4518e4921e/myTAI/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-myTAI/00new/myTAI/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘myTAI’ finding HTML links ... done CollapseReplicates html CombinatorialSignificance html DiffGenes html DivergenceExpressionSetExample html EarlyConservationTest html EnrichmentTest html Expressed html FlatLineTest html GroupDiffs html MatchMap html PhyloExpressionSetExample html PlotBarRE html PlotCIRatio html PlotCategoryExpr html PlotContribution html PlotCorrelation html PlotDistribution html PlotEnrichment html PlotGeneSet html PlotGroupDiffs html PlotMeans html PlotMedians html PlotPattern html PlotRE html PlotReplicateQuality html PlotSelectedAgeDistr html PlotSignature html PlotVars html RE html REMatrix html ReductiveHourglassTest html ReverseHourglassTest html SelectGeneSet html TAI html TDI html TPI html age.apply html bar.colors html bootMatrix html ecScore html geom.mean html harm.mean html is.ExpressionSet html omitMatrix html pMatrix html pStrata html pTAI html pTDI html reversehourglassScore html rhScore html taxid html taxonomy html tf html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (myTAI)