Install log for 'mvMORPH'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mvMORPH’ ...
** package ‘mvMORPH’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6fnhwE/R.INSTALL2ee04a7cca5c4d/mvMORPH/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chol_rpf_row.c -o chol_rpf_row.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chol_rpf_univ.c -o chol_rpf_univ.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c covar-matrix-simmap.c -o covar-matrix-simmap.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c givens.c -o givens.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kronecker.c -o kronecker.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mvMORPH_init.c -o mvMORPH_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mvmorph-covar-mat.c -o mvmorph-covar-mat.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mvmorph-covar-ou-sparse.c -o mvmorph-covar-ou-sparse.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mvmorph-covar-ou.c -o mvmorph-covar-ou.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mvmorph_ou_mat_rpf.c -o mvmorph_ou_mat_rpf.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pic_loglik_mvmorph.c -o pic_loglik_mvmorph.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c quadprod.c -o quadprod.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c root2tip.c -o root2tip.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c spherical.c -o spherical.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sqrtMat.c -o sqrtMat.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c time_serie_expectation.c -o time_serie_expectation.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c utils.c -o utils.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c weight-matrix-mvmorph.c -o weight-matrix-mvmorph.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mvMORPH.so chol_rpf_row.o chol_rpf_univ.o covar-matrix-simmap.o givens.o kronecker.o mvMORPH_init.o mvmorph-covar-mat.o mvmorph-covar-ou-sparse.o mvmorph-covar-ou.o mvmorph_ou_mat_rpf.o pic_loglik_mvmorph.o quadprod.o root2tip.o spherical.o sqrtMat.o time_serie_expectation.o utils.o weight-matrix-mvmorph.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6fnhwE/R.INSTALL2ee04a7cca5c4d/mvMORPH/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6fnhwE/R.INSTALL2ee04a7cca5c4d/mvMORPH/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6fnhwE/R.INSTALL2ee04a7cca5c4d/mvMORPH/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mvMORPH/00new/mvMORPH/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mvMORPH’
    finding HTML links ... done
    EIC                                     html  
    GIC                                     html  
    LRT                                     html  
    aicw                                    html  
    ancestral                               html  
    coef.mvgls                              html  
    dfaShape                                html  
    effectsize                              html  
    estim                                   html  
    fitted.mvgls                            html  
    halflife                                html  
    manova.gls                              html  
    mv.Precalc                              html  
    mvBM                                    html  
    mvEB                                    html  
    mvLL                                    html  
    mvMORPH-package                         html  
    mvOU                                    html  
    mvOUTS                                  html  
    mvRWTS                                  html  
    mvSHIFT                                 html  
    mvSIM                                   html  
    mvgls                                   html  
    mvgls.dfa                               html  
    mvgls.pca                               html  
    mvols                                   html  
    mvqqplot                                html  
    pairwise.contrasts                      html  
    pairwise.glh                            html  
    pcaShape                                html  
    phyllostomid                            html  
    predict.mvgls                           html  
    predict.mvgls.dfa                       html  
    pruning                                 html  
    residuals.mvgls                         html  
    stationary                              html  
    vcov.mvgls                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvMORPH)