* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mstate’ ...
** package ‘mstate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-6) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpu6N3dO/R.INSTALL1afcd7660a0da9/mstate/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c agmssurv.c -o agmssurv.o
agmssurv.c: In function ‘agmssurv’:
agmssurv.c:63:20: warning: variable ‘H’ set but not used [-Wunused-but-set-variable]
   63 |     int n, p, var, H, K, nt, method;
      |                    ^
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mstate_init.c -o mstate_init.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mstate.so agmssurv.o mstate_init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu6N3dO/R.INSTALL1afcd7660a0da9/mstate/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpu6N3dO/R.INSTALL1afcd7660a0da9/mstate/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpu6N3dO/R.INSTALL1afcd7660a0da9/mstate/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mstate/00new/mstate/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mstate’
    finding HTML links ... done
    Cuminc                                  html  
    EBMT-cause-of-death-data                html  
    EBMT-data                               html  
    EBMT-platelet-recovery-data             html  
    EBMT-year-of-relapse-data               html  
    ELOS                                    html  
    LMAJ                                    html  
    Liver-cirrhosis-data                    html  
    MarkovTest                              html  
    aidssi                                  html  
    bmt                                     html  
    crprep.default                          html  
    cutLMms                                 html  
    etm2msdata                              html  
    events                                  html  
    expand.covs                             html  
    expand.covs.msdata                      html  
    haz_function                            html  
    modify_transMat                         html  
    msboot                                  html  
    msboot.relsurv                          html  
    msboot.relsurv.boot                     html  
    msdata2etm                              html  
    msfit                                   html  
    msfit.relsurv                           html  
    msprep                                  html  
    mssample                                html  
    mstate-package                          html  
    paths                                   html  
    plot.Cuminc                             html  
    plot.MarkovTest                         html  
    plot.msfit                              html  
    plot.probtrans                          html  
    print.MarkovTest                        html  
    print.msdata                            html  
    print.summary.msfit                     html  
    print.summary.probtrans                 html  
    probtrans                               html  
    redrank                                 html  
    summary.Cuminc                          html  
    summary.msfit                           html  
    summary.probtrans                       html  
    trans2tra                               html  
    transMat                                html  
    transhelp                               html  
    varHaz.fixed                            html  
    vis.mirror.pt                           html  
    vis.multiple.pt                         html  
    xsect                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mstate)