* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mrf2d’ ...
** package ‘mrf2d’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpumKq06/R.INSTALL34f06d30fde4ee/mrf2d/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c conditional_probability.cpp -o conditional_probability.o
conditional_probability.cpp: In function ‘arma::fcube all_cond_probs(const Rcpp::IntegerMatrix&, Rcpp::IntegerMatrix, const arma::fcube&)’:
conditional_probability.cpp:82:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |   for(unsigned int i=0;i<N;i++){
      |                        ~^~
conditional_probability.cpp:83:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   83 |     for(unsigned int j=0;j<M;j++){
      |                          ~^~
conditional_probability.cpp:86:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   86 |       for(unsigned int k=0; k<=C; k++){
      |                             ~^~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gibbs_sampler_mrf.cpp -o gibbs_sampler_mrf.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pairwise_counts.cpp -o pairwise_counts.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pseudo_likelihood.cpp -o pseudo_likelihood.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mrf2d.so RcppExports.o conditional_probability.o gibbs_sampler_mrf.o pairwise_counts.o pseudo_likelihood.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpumKq06/R.INSTALL34f06d30fde4ee/mrf2d/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpumKq06/R.INSTALL34f06d30fde4ee/mrf2d/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpumKq06/R.INSTALL34f06d30fde4ee/mrf2d/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mrf2d/00new/mrf2d/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘mrf2d’
    finding HTML links ... done
    Z_potts                                 html  
    basis_functions                         html  
    bold5000                                html  
    cpmrf2d                                 html  
    data_examples                           html  
    dplot                                   html  
    fit_ghm                                 html  
    fit_pl                                  html  
    fit_sa                                  html  
    hmrfout                                 html  
    mrf2d-family                            html  
    mrf2d-package                           html  
    mrfi-class                              html  
    mrfout                                  html  
    pl_mrf2d                                html  
    plot.mrfi                               html  
    rmrf2d                                  html  
    rmrf2d_mc                               html  
    smr_array                               html  
    smr_stat                                html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mrf2d)