* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘moveHMM’ ...
** this is package ‘moveHMM’ version ‘1.10’
** package ‘moveHMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYNxTB6/R.INSTALL374eeb5a82ed95/moveHMM/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c moveHMM_init.c -o moveHMM_init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nLogLike.cpp -o nLogLike.o
nLogLike.cpp: In function ‘double nLogLike_rcpp(int, arma::mat, arma::mat, Rcpp::DataFrame, std::string, std::string, arma::mat, arma::mat, arma::rowvec, Rcpp::IntegerVector, bool, bool, Rcpp::IntegerVector)’:
nLogLike.cpp:187:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
187 | for(int i=0 ; i<allProbs.n_rows ; i++) {
| ~^~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c trMatrix.cpp -o trMatrix.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o moveHMM.so RcppExports.o moveHMM_init.o nLogLike.o trMatrix.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYNxTB6/R.INSTALL374eeb5a82ed95/moveHMM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYNxTB6/R.INSTALL374eeb5a82ed95/moveHMM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYNxTB6/R.INSTALL374eeb5a82ed95/moveHMM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-moveHMM/00new/moveHMM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘moveHMM’
finding HTML links ... done
AIC.moveHMM html
CI html
allProbs html
angleCI html
dexp_rcpp html
dgamma_rcpp html
dlnorm_rcpp html
dvm_rcpp html
dweibull_rcpp html
dwrpcauchy_rcpp html
elk_data html
exGen html
example html
fitHMM html
getPalette html
getPlotData html
haggis_data html
is.moveData html
is.moveHMM html
logAlpha html
logBeta html
moveData html
moveHMM html
n2w html
nLogLike html
nLogLike_rcpp html
parDef html
plot.moveData html
plot.moveHMM html
plotPR html
plotSat html
plotStates html
plotStationary html
predictStationary html
predictTPM html
prepData html
print.moveHMM html
pseudoRes html
simData html
splitAtGaps html
stateProbs html
stationary html
summary.moveData html
trMatrix_rcpp html
turnAngle html
viterbi html
w2n html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (moveHMM)