* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mkde’ ...
** package ‘mkde’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWha49X/R.INSTALL2d028463617f77/mkde/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mkdeFunctions.cpp -o mkdeFunctions.o
mkdeFunctions.cpp: In function ‘SEXPREC* writeRasterToXDMF02(SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:1367:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
1367 | for (int i = 0; i < r.size(); i++) {
| ~~^~~~~~~~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde3dGridv02interact(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:901:47: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
901 | tmpDens0 = (t - tOld) * pXYZ0 / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:768:23: note: ‘tOld’ was declared here
768 | double t0, t1, t, tOld, dt, alpha;
| ^~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde2dGrid02(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:300:42: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
300 | tmpDens = (t - tOld) * pXY / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:242:23: note: ‘tOld’ was declared here
242 | double t0, t1, t, tOld, dt, alpha, totalT;
| ^~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde3dGridv02(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:658:46: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
658 | tmpDens = (t - tOld) * pXYZ / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:567:23: note: ‘tOld’ was declared here
567 | double t0, t1, t, tOld, dt, alpha;
| ^~~~
mkdeFunctions.cpp: In function ‘SEXPREC* mkde2dGridv02interact(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
mkdeFunctions.cpp:471:42: warning: ‘tOld’ may be used uninitialized [-Wmaybe-uninitialized]
471 | tmpDens = (t - tOld) * pXY / 2.0;
| ~~~^~~~~~~
mkdeFunctions.cpp:386:23: note: ‘tOld’ was declared here
386 | double t0, t1, t, tOld, dt, alpha;
| ^~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mkde.so init.o mkdeFunctions.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWha49X/R.INSTALL2d028463617f77/mkde/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWha49X/R.INSTALL2d028463617f77/mkde/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWha49X/R.INSTALL2d028463617f77/mkde/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mkde/00new/mkde/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mkde’
finding HTML links ... done
computeAreaRaster html
computeContourValues html
computeSizeMKDE html
condor html
condordem html
condordem120 html
deselectLocationsOutsideBounds html
deselectNonMovementSteps html
dugong html
dugongdem html
estVarMKDE html
initializeAreaRaster html
initializeDensity html
initializeMKDE2D html
initializeMKDE3D html
initializeMovementData html
mkde-package html
mkde2Dgrid html
mkde2Dinteraction html
mkde3Dgrid html
mkde3Dinteraction html
mkdeToTerra html
panda html
pandadem html
plotMKDE html
setMaximumZfromConstant html
setMaximumZfromRaster html
setMinimumZfromConstant html
setMinimumZfromRaster html
writeInterpolatedPathVTK html
writeObservedLocationVTK html
writeRasterToVTK html
writeRasterToXDMF html
writeToGRASS html
writeToVTK html
writeToXDMF html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mkde)