* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mizer’ ...
** package ‘mizer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY01UYf/R.INSTALL2ab1cf342a2f7c/mizer/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c inner_project_loop.cpp -o inner_project_loop.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mizer.so RcppExports.o inner_project_loop.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY01UYf/R.INSTALL2ab1cf342a2f7c/mizer/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY01UYf/R.INSTALL2ab1cf342a2f7c/mizer/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY01UYf/R.INSTALL2ab1cf342a2f7c/mizer/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mizer/00new/mizer/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mizer’
finding HTML links ... done
BevertonHoltRDD html
MizerParams-class html
MizerParams html
MizerSim-class html
MizerSim html
N html
NOther html
NS_interaction html
NS_params html
NS_sim html
NS_species_params html
NS_species_params_gears html
RickerRDD html
SheperdRDD html
addSpecies html
age_mat html
age_mat_vB html
animateSpectra html
box_pred_kernel html
calc_selectivity html
calibrateBiomass html
calibrateNumber html
calibrateYield html
compareParams html
completeSpeciesParams html
constantEggRDI html
constantRDD html
constant_other html
customFunction html
default_pred_kernel_params html
defaults_edition html
different html
distanceMaxRelRDI html
distanceSSLogN html
double_sigmoid_length html
emptyParams html
finalN html
finalNOther html
gear_params html
getBiomass html
getCommunitySlope html
getComponent html
getCriticalFeedingLevel html
getDiet html
getEGrowth html
getERepro html
getEReproAndGrowth html
getESpawning html
getEffort html
getEncounter html
getFMort html
getFMortGear html
getFeedingLevel html
getGrowthCurves html
getInteraction html
getM2 html
getM2Background html
getMeanMaxWeight html
getMeanWeight html
getMort html
getN html
getParams html
getPhiPrey html
getPredMort html
getPredRate html
getProportionOfLargeFish html
getRDD html
getRDI html
getRates html
getReproductionLevel html
getResourceDynamics html
getResourceMort html
getSSB html
getTimes html
getYield html
getYieldGear html
getZ html
get_f0_default html
get_gamma_default html
get_h_default html
get_initial_n html
get_ks_default html
get_phi html
get_required_reproduction html
get_size_range_array html
get_time_elements html
indicator_functions html
initialN-set html
initialNOther-set html
initialNResource-set html
initial_effort html
inter html
knife_edge html
l2w html
log_breaks html
lognormal_pred_kernel html
matchBiomasses html
matchGrowth html
matchNumbers html
matchYields html
mizer-package html
mizerEGrowth html
mizerERepro html
mizerEReproAndGrowth html
mizerEncounter html
mizerFMort html
mizerFMortGear html
mizerFeedingLevel html
mizerMort html
mizerPredMort html
mizerPredRate html
mizerRDI html
mizerRates html
mizerResourceMort html
needs_upgrading html
newCommunityParams html
newMultispeciesParams html
newSingleSpeciesParams html
newTraitParams html
noRDD html
plot-MizerParams-missing-method html
plotBiomass html
plotBiomassObservedVsModel html
plotDataFrame html
plotDiet html
plotFMort html
plotFeedingLevel html
plotGrowthCurves html
plotM2 html
plotMizerSim html
plotPredMort html
plotSpectra html
plotYield html
plotYieldGear html
plotYieldObservedVsModel html
plotting_functions html
power_law_pred_kernel html
project html
projectToSteady html
project_simple html
reexports html
removeSpecies html
renameSpecies html
resource_constant html
resource_logistic html
resource_params html
resource_semichemostat html
saveParams html
scaleModel html
setBevertonHolt html
setColours html
setComponent html
setExtEncounter html
setExtMort html
setFishing html
setInitialValues html
setInteraction html
setMaxIntakeRate html
setMetabolicRate html
setMetadata html
setParams html
setPredKernel html
setRateFunction html
setReproduction html
setResource html
setRmax html
setSearchVolume html
set_community_model html
set_multispecies_model html
set_species_param_default html
set_trait_model html
sigmoid_length html
sigmoid_weight html
species_params html
steady html
steadySingleSpecies html
summary-MizerParams-method html
summary-MizerSim-method html
summary_functions html
truncated_lognormal_pred_kernel html
upgradeParams html
upgradeSim html
validGearParams html
validParams html
validSim html
validSpeciesParams html
valid_gears_arg html
valid_species_arg html
w html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mizer)