* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mixR’ ...
** package ‘mixR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiAgeAR/R.INSTALL2eafdf4a9dba49/mixR/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mixCpp.cpp -o mixCpp.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/sugar/functions/functions.h:54,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/sugar/sugar.h:31,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:78,
from mixCpp.cpp:1:
In member function ‘double Rcpp::sugar::Pow<RTYPE, NA, T, EXPONENT_TYPE>::operator[](R_xlen_t) const [with int RTYPE = 14; bool NA = true; T = Rcpp::Vector<14, Rcpp::PreserveStorage>; EXPONENT_TYPE = double]’,
inlined from ‘double Rcpp::sugar::Times_Vector_Vector<14, LHS_NA, LHS_T, RHS_NA, RHS_T>::operator[](R_xlen_t) const [with bool LHS_NA = true; LHS_T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >; bool RHS_NA = true; RHS_T = Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double>]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/sugar/operators/times.h:71:23,
inlined from ‘double Rcpp::sugar::Sum<14, NA, T>::get() const [with bool NA = true; T = Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> >]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/sugar/functions/sum.h:65:22,
inlined from ‘Rcpp::sugar::Lazy<T, EXPR>::operator T() const [with T = double; EXPR = Rcpp::sugar::Sum<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::sugar::Times_Vector_Vector<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >, true, Rcpp::sugar::Pow<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage>, double> > >]’ at /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/sugar/functions/Lazy.h:31:72,
inlined from ‘Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’ at mixCpp.cpp:867:54:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/sugar/functions/pow.h:36:25: warning: ‘r_new’ may be used uninitialized [-Wmaybe-uninitialized]
36 | return ::pow( object[i], op );
| ~~~~~^~~~~~~~~~~~~~~~~
mixCpp.cpp: In function ‘Rcpp::NumericVector newton_weib_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’:
mixCpp.cpp:860:30: note: ‘r_new’ was declared here
860 | double theta, lambda, k, r_new;
| ^~~~~
mixCpp.cpp: In function ‘Rcpp::NumericVector newton_gamma_C(Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, int)’:
mixCpp.cpp:536:12: warning: ‘alpha_new’ may be used uninitialized [-Wmaybe-uninitialized]
536 | lambda = alpha_new / delta;
| ~~~~~~~^~~~~~~~~~~~~~~~~~~
mixCpp.cpp:528:12: note: ‘alpha_new’ was declared here
528 | double alpha_new, lambda;
| ^~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mixR.so RcppExports.o mixCpp.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiAgeAR/R.INSTALL2eafdf4a9dba49/mixR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpiAgeAR/R.INSTALL2eafdf4a9dba49/mixR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpiAgeAR/R.INSTALL2eafdf4a9dba49/mixR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mixR/00new/mixR/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mixR’
finding HTML links ... done
Stamp html
Stamp2 html
bin html
bs.test html
density.mixfitEM html
initz html
mixR-package html
mixfit html
plot.bootEM html
plot.mixfitEM html
plot.selectEM html
print.mixfitEM html
print.selectEM html
reinstate html
rmixgamma html
rmixlnorm html
rmixnormal html
rmixweibull html
select html
to_k_lambda_weibull html
to_mu_sd_gamma html
to_mu_sd_lnorm html
to_mu_sd_weibull html
to_mulog_sdlog_lnorm html
to_shape_rate_gamma html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mixR)