* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘metasnf’ ... ** package ‘metasnf’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘metasnf’ finding HTML links ... done abcd_anxiety html abcd_colour html abcd_cort_sa html abcd_cort_t html abcd_depress html abcd_h_income html abcd_income html abcd_pubertal html abcd_subc_v html add_columns html add_settings_df_rows html adjusted_rand_index_heatmap html age_df html alluvial_cluster_plot html anxiety html arrange html arrange_dll html as.data.frame.data_list html as.data.frame.ext_solutions_df html as.data.frame.solutions_df html as_ari_matrix html as_data_list html as_settings_df html as_sim_mats_list html as_snf_config html as_weights_matrix html assemble_data html assoc_pval_heatmap html auto_plot html bar_plot html batch_row_closure html batch_snf html batch_snf_subsamples html calc_aris html calc_assoc_pval html calc_assoc_pval_matrix html calc_nmis html calculate_coclustering html cancer_diagnosis_df html cat_colours html cell_significance_fn html char_to_fac html check_cfll_fn_args html check_cfll_fns html check_cfll_named html check_cfll_unique_names html check_compatible_sdf_cfl html check_compatible_sdf_dfl html check_compatible_sdf_wm html check_dataless_annotations html check_dfll_fn_args html check_dfll_fn_names html check_dfll_item_names html check_dfll_subitems_are_fns html check_dfll_unique_names html check_dll_duplicate_components html check_dll_duplicate_features html check_dll_empty_input html check_dll_four_subitems html check_dll_inherits_list html check_dll_subitem_classes html check_dll_subitem_names html check_dll_types html check_dll_uid html check_hm_dependencies html check_sdfl_colnames html check_sdfl_is_df html check_sdfl_numeric html check_similarity_matrices html check_valid_k html check_valid_sc html chi_squared_pval html clust_fns html clust_fns_list html cocluster_density html cocluster_heatmap html coclustering_coverage_check html collapse_dl html colour_scale html config_heatmap html convert_uids html cort_sa html cort_t html data_list html depress html diagnosis_df html discretisation html discretisation_evec_data html dist_fns html dist_fns_list html dl_variable_summary html dlapply html dll_uid_first_col html domains html drop_cols html drop_inputs html ensure_dll_df html esm_manhattan_plot html estimate_nclust_given_graph html expression_df html ext_solutions_df html extend_solutions html fav_colour html features html fisher_exact_pval html gender_df html generate_annotations_list html generate_clust_algs_list html generate_distance_metrics_list html generate_settings_matrix html get_cluster_df html get_cluster_solutions html get_clusters html get_complete_uids html get_dist_matrix html get_dl_uids html get_heatmap_order html get_matrix_order html get_mean_pval html get_min_pval html get_pvals html get_representative_solutions html gexclude html gselect html income html is_data_list html jitter_plot html label_meta_clusters html label_prop html label_propagate html label_splits html linear_adjust html linear_model_pval html mc_manhattan_plot html merge.snf_config html merge_df_list html merge_dls html meta_cluster_heatmap html metasnf-package html metasnf_alert html metasnf_defunct html metasnf_deprecated html metasnf_error html metasnf_warning html methylation_df html n_features html n_observations html new_ari_matrix html new_clust_fns_list html new_data_list html new_dist_fns_list html new_ext_solutions_df html new_settings_df html new_sim_mats_list html new_snf_config html new_solutions_df html new_weights_matrix html not_shown_message html numcol_to_numeric html ord_reg_pval html parallel_batch_snf html pick_cols html prefix_dll_uid html print.ari_matrix html print.clust_fns_list html print.data_list html print.dist_fns_list html print.ext_solutions_df html print.settings_df html print.snf_config html print.solutions_df html print.t_ext_solutions_df html print.t_solutions_df html print.weights_matrix html print_with_n_message html print_with_t_message html pubertal html pval_heatmap html quality_measures html random_removal html rbind.ext_solutions_df html rbind.solutions_df html remove_dll_incomplete html rename_dl html reorder_dl_uids html resample html run_snf html save_heatmap html scale_diagonals html settings_df html shiny_annotator html sim_mats_list html similarity_matrix_heatmap html similarity_matrix_path html siw_euclidean_distance html snf_config html snf_scheme html snf_step html sol_df_col_order html solutions_df html split_parser html subc_v html subsample_dl html subsample_pairwise_aris html summarize_clust_fns_list html summarize_dfl html summarize_dl html summarize_pvals html summary.data_list html summary_features html train_test_assign html uids html validate_ari_matrix html validate_clust_fns_list html validate_data_list html validate_dist_fns_list html validate_ext_solutions_df html validate_settings_df html validate_sim_mats_list html validate_snf_config html validate_solutions_df html validate_weights_matrix html var_manhattan_plot html weights_matrix html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metasnf)