* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘matrixStats’ ...
** package ‘matrixStats’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP7s1Yn/R.INSTALL26b12e4b30f5c7/matrixStats/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c 000.init.c -o 000.init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c allocMatrix2.c -o allocMatrix2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c anyMissing.c -o anyMissing.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binCounts.c -o binCounts.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binMeans.c -o binMeans.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colCounts.c -o colCounts.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colOrderStats.c -o colOrderStats.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colRanges.c -o colRanges.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diff2.c -o diff2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c indexByRow.c -o indexByRow.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logSumExp.c -o logSumExp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mean2.c -o mean2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c naming.c -o naming.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c productExpSumLog.c -o productExpSumLog.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psortKM.c -o psortKM.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCounts.c -o rowCounts.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCummaxs.c -o rowCummaxs.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCummins.c -o rowCummins.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCumprods.c -o rowCumprods.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCumsums.c -o rowCumsums.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowDiffs.c -o rowDiffs.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowLogSumExp.c -o rowLogSumExp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMads.c -o rowMads.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMeans2.c -o rowMeans2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMedians.c -o rowMedians.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowOrderStats.c -o rowOrderStats.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowRanges.c -o rowRanges.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowRanksWithTies.c -o rowRanksWithTies.o
In file included from rowRanksWithTies_lowlevel.h:23,
from rowRanksWithTies.c:10:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Average_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:40:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_First_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:57:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Last_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:91:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Min_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:108:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Max_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:125:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Dense_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
In file included from rowRanksWithTies_lowlevel.h:74:
rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Random_dbl’:
rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized]
169 | values[ jj ] = lastFinite_val;
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here
150 | X_C_TYPE lastFinite_val;
| ^~~~~~~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowSums2.c -o rowSums2.o
In file included from rowSums2_lowlevel.h:14,
from rowSums2.c:12:
rowSums2_lowlevel_template.h: In function ‘rowSums2_int’:
rowSums2_lowlevel_template.h:96:24: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized]
96 | rowSum[ii] = R_NaReal;
| ~~~~~~~~~~~^~~~~~~~~~
rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here
35 | LDOUBLE *rowSum;
| ^~~~~~
In file included from rowSums2_lowlevel.h:18:
rowSums2_lowlevel_template.h: In function ‘rowSums2_dbl’:
rowSums2_lowlevel_template.h:114:24: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized]
114 | rowSum[ii] += (LDOUBLE)value;
| ~~~~~~~~~~~^~~~~~~~~~~~~~~~~
rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here
35 | LDOUBLE *rowSum;
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowVars.c -o rowVars.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c signTabulate.c -o signTabulate.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sum2.c -o sum2.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validateIndices.c -o validateIndices.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedMean.c -o weightedMean.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedMedian.c -o weightedMedian.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c x_OP_y.c -o x_OP_y.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP7s1Yn/R.INSTALL26b12e4b30f5c7/matrixStats/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpP7s1Yn/R.INSTALL26b12e4b30f5c7/matrixStats/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpP7s1Yn/R.INSTALL26b12e4b30f5c7/matrixStats/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-matrixStats/00new/matrixStats/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘matrixStats’
finding HTML links ... done
allocMatrix html
anyMissing html
binCounts html
binMeans html
diff2 html
indexByRow html
logSumExp html
matrixStats-package html
matrixStats.options html
mean2 html
rowAlls html
rowAvgsPerColSet html
rowCollapse html
rowCounts html
rowCumsums html
rowDiffs html
rowIQRs html
rowLogSumExps html
rowMeans2 html
rowMedians html
rowOrderStats html
rowProds html
rowQuantiles html
rowRanges html
rowRanks html
rowSds html
rowSums2 html
rowTabulates html
rowVars html
rowWeightedMeans html
rowWeightedMedians html
signTabulate html
sum2 html
varDiff html
weightedMad html
weightedMean html
weightedMedian html
weightedVar html
x_OP_y html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (matrixStats)