* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘mRMRe’ ...
** package ‘mRMRe’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGXbv44/R.INSTALL2525de1b3d9ad8/mRMRe/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Data.cpp -o Data.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Filter.cpp -o Filter.o
Filter.cpp: In member function ‘const void Filter::placeElements(unsigned int, unsigned int, unsigned int)’:
Filter.cpp:198:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
198 | for (int j = 0; j < mFixedFeatureCount; ++j)
| ~~^~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Math.cpp -o Math.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Matrix.cpp -o Matrix.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MutualInformationMatrix.cpp -o MutualInformationMatrix.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o
exports.cpp: In function ‘SEXPREC* export_concordance_index(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
exports.cpp:55:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
55 | for (unsigned int i = 0; i < INTEGER(sampleStratumCount)[0]; ++i)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
exports.cpp: In function ‘SEXPREC* export_filters(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
exports.cpp:80:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
80 | for (unsigned int i = 0; i < LENGTH(childrenCountPerLevel); ++i)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
exports.cpp:92:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
92 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
exports.cpp:105:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
105 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
exports.cpp: In function ‘SEXPREC* export_filters_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
exports.cpp:153:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
153 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
exports.cpp:159:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
159 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
exports.cpp:168:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
168 | for (unsigned int j = 0; j < LENGTH(targetFeatureIndices); ++j)
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o mRMRe.so Data.o Filter.o Math.o Matrix.o MutualInformationMatrix.o exports.o -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGXbv44/R.INSTALL2525de1b3d9ad8/mRMRe/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGXbv44/R.INSTALL2525de1b3d9ad8/mRMRe/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGXbv44/R.INSTALL2525de1b3d9ad8/mRMRe/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-mRMRe/00new/mRMRe/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘mRMRe’
finding HTML links ... done
adjacencyMatrix html
causality html
cgps html
correlate html
export_concordance_index html
export_filters html
export_filters_bootstrap html
export_mim html
featureCount html
featureData html
featureNames html
get.thread.count html
get_thread_count html
mRMRe.Data-class html
mRMRe.Filter-class html
mRMRe.Network-class html
mim html
priors html
sampleCount html
sampleNames html
sampleStrata html
sampleWeights html
scores html
set.thread.count html
set_thread_count html
solutions html
subsetData html
target html
visualize html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mRMRe)