* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘lnmixsurv’ ... ** package ‘lnmixsurv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOWhrxv/R.INSTALL111dec326fa2e8/lnmixsurv/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppGSL/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 `/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "RcppGSL:::CFlags()"` -DARMA_64BIT_WORD=1 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppGSL/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 `/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "RcppGSL:::CFlags()"` -DARMA_64BIT_WORD=1 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c lognormal_mixture_gibbs.cpp -o lognormal_mixture_gibbs.o In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/tbb.h:32, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel/TBB.h:10, from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/RcppParallel.h:24, from lognormal_mixture_gibbs.cpp:5: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = long unsigned int]’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here 251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic<long unsigned int>&’ does not use ‘constexpr tbb::atomic<long unsigned int>::atomic(long unsigned int)’ [-Wcast-user-defined] 544 | return (atomic<T>&)t; | ^~~~~~~~~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic<T>& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]’: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here 291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL ) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::hash_map_base::bucket*’ to ‘tbb::atomic<tbb::interface5::internal::hash_map_base::bucket*>&’ does not use ‘constexpr tbb::atomic<T*>::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]’ [-Wcast-user-defined] 544 | return (atomic<T>&)t; | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppGSL/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 `/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "RcppGSL:::CFlags()"` -DARMA_64BIT_WORD=1 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c predict.cpp -o predict.o predict.cpp: In function ‘double sob_lognormal_mix(const double&, const arma::rowvec&, const arma::vec&, const arma::vec&)’: predict.cpp:17:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 17 | for (int i = 0; i < m.n_elem; i++) { | ~~^~~~~~~~~~ predict.cpp: In function ‘double hazard_lognormal_mix(const double&, const arma::rowvec&, const arma::vec&, const arma::vec&)’: predict.cpp:27:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 27 | for (int i = 0; i < m.n_elem; i++) { | ~~^~~~~~~~~~ predict.cpp: In function ‘arma::mat predict_survival_gibbs_cpp(const arma::vec&, const arma::rowvec&, const arma::field<arma::Mat<double> >&, arma::mat, arma::mat, const bool&, const double&)’: predict.cpp:77:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 77 | for(int time = 0; time < eval_time.n_elem; time++) { | ~~~~~^~~~~~~~~~~~~~~~~~ predict.cpp: In function ‘arma::mat predict_hazard_gibbs_cpp(const arma::vec&, const arma::rowvec&, const arma::field<arma::Mat<double> >&, arma::mat, arma::mat, const bool&, const double&)’: predict.cpp:140:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare] 140 | for(int time = 0; time < eval_time.n_elem; time++) { | ~~~~~^~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppGSL/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 `/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "RcppGSL:::CFlags()"` -DARMA_64BIT_WORD=1 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c simulate_data.cpp -o simulate_data.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lnmixsurv.so RcppExports.o lognormal_mixture_gibbs.o predict.o simulate_data.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOWhrxv/R.INSTALL111dec326fa2e8/lnmixsurv/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOWhrxv/R.INSTALL111dec326fa2e8/lnmixsurv/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOWhrxv/R.INSTALL111dec326fa2e8/lnmixsurv/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lnmixsurv/00new/lnmixsurv/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘lnmixsurv’ finding HTML links ... done augment.survival_ln_mixture html augment.survival_ln_mixture_em html join_empirical_hazard html lnmixsurv-package html nobs.survival_ln_mixture html plot.survival_ln_mixture_em html plot_fit_on_data html predict.survival_ln_mixture html predict.survival_ln_mixture_em html reexports html sim_data html simulate_data html survival_ln_mixture html survival_ln_mixture_em html tidy.survival_ln_mixture html tidy.survival_ln_mixture_em html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lnmixsurv)