Install log for 'literanger'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘literanger’ ...
** package ‘literanger’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmY4cv8/R.INSTALL17762451e25922/literanger/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../src -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp11.cpp -o cpp11.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../src -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp11_io.cpp -o cpp11_io.o
In file included from ../src/literanger/Forest.defn.h:35,
                 from ../src/literanger/ForestClassification.defn.h:39,
                 from literanger/ForestClassification.h:18,
                 from cpp11_io.cpp:49:
../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, std::shared_ptr<const literanger::Data>, literanger::key_vector&)’:
../src/literanger/TreeBase.defn.h:429:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  429 |         const ull_bitenc partition_key = *((unsigned long long *)(&split_value));
      |                                           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:51,
                 from cpp11_io.decl.h:33,
                 from cpp11_io.cpp:30:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const double; _Up = double; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:521:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:548:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:555:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:651:7,
    inlined from ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _ForwardIterator = double*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _ForwardIterator = double*; _Tp = double]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/14/bits/stl_vector.h:606:31,
    inlined from ‘std::vector<double> literanger::adjust_pvalues(const std::vector<double>&)’ at ../src/literanger/utility_math.h:98:30:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=]
  452 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../src -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp11_predict.cpp -o cpp11_predict.o
In file included from ../src/literanger/Forest.defn.h:35,
                 from ../src/literanger/ForestClassification.defn.h:39,
                 from literanger/ForestClassification.h:18,
                 from cpp11_predict.cpp:47:
../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, std::shared_ptr<const literanger::Data>, literanger::key_vector&)’:
../src/literanger/TreeBase.defn.h:429:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  429 |         const ull_bitenc partition_key = *((unsigned long long *)(&split_value));
      |                                           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/specfun.h:43,
                 from /usr/include/c++/14/cmath:3898,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include/cpp11/as.hpp:3,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include/cpp11.hpp:5,
                 from cpp11_predict.decl.h:35,
                 from cpp11_predict.cpp:30:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const double; _Up = double; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:521:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:548:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:555:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:651:7,
    inlined from ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _ForwardIterator = double*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _ForwardIterator = double*; _Tp = double]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/14/bits/stl_vector.h:606:31,
    inlined from ‘std::vector<double> literanger::adjust_pvalues(const std::vector<double>&)’ at ../src/literanger/utility_math.h:98:30:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=]
  452 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcereal/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../src -fpic  -g -O2 -Wall -pedantic -mtune=native   -c cpp11_train.cpp -o cpp11_train.o
In file included from ../src/literanger/Forest.defn.h:35,
                 from ../src/literanger/ForestClassification.defn.h:39,
                 from literanger/ForestClassification.h:18,
                 from cpp11_train.cpp:45:
../src/literanger/TreeBase.defn.h: In member function ‘bool literanger::TreeBase::split_node(size_t, size_t, size_t, std::shared_ptr<const literanger::Data>, literanger::key_vector&)’:
../src/literanger/TreeBase.defn.h:429:44: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  429 |         const ull_bitenc partition_key = *((unsigned long long *)(&split_value));
      |                                           ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_uninitialized.h:63,
                 from /usr/include/c++/14/memory:69,
                 from cpp11_train.decl.h:33,
                 from cpp11_train.cpp:30:
In static member function ‘static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = const double; _Up = double; bool _IsMove = false]’,
    inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:521:30,
    inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const double*; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:548:42,
    inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:555:31,
    inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _OI = double*]’ at /usr/include/c++/14/bits/stl_algobase.h:651:7,
    inlined from ‘static _ForwardIterator std::__uninitialized_copy<true>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; _ForwardIterator = double*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:147:27,
    inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _ForwardIterator = double*]’ at /usr/include/c++/14/bits/stl_uninitialized.h:185:15,
    inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator<const double*, vector<double> >; _ForwardIterator = double*; _Tp = double]’ at /usr/include/c++/14/bits/stl_uninitialized.h:373:37,
    inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = double; _Alloc = std::allocator<double>]’ at /usr/include/c++/14/bits/stl_vector.h:606:31,
    inlined from ‘std::vector<double> literanger::adjust_pvalues(const std::vector<double>&)’ at ../src/literanger/utility_math.h:98:30:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: ‘void* __builtin_memmove(void*, const void*, long unsigned int)’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=]
  452 |             __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
      |             ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o literanger.so cpp11.o cpp11_io.o cpp11_predict.o cpp11_train.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmY4cv8/R.INSTALL17762451e25922/literanger/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmY4cv8/R.INSTALL17762451e25922/literanger/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmY4cv8/R.INSTALL17762451e25922/literanger/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-literanger/00new/literanger/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘literanger’
    finding HTML links ... done
    literanger-package                      html  
    predict.literanger                      html  
    read_literanger                         html  
    train                                   html  
    write_literanger                        html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (literanger)