* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lineup’ ...
** package ‘lineup’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpI4BakP/R.INSTALL248f70478482a1/lineup/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c R_init.c -o R_init.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c corbetw2mat.c -o corbetw2mat.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fscale.c -o fscale.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c propmismatch.c -o propmismatch.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rmsd.c -o rmsd.o
gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c util.c -o util.o
gcc-14 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lineup.so R_init.o corbetw2mat.o fscale.o propmismatch.o rmsd.o util.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpI4BakP/R.INSTALL248f70478482a1/lineup/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpI4BakP/R.INSTALL248f70478482a1/lineup/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpI4BakP/R.INSTALL248f70478482a1/lineup/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lineup/00new/lineup/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘lineup’
    finding HTML links ... done
    calc.locallod                           html  
    combinedist                             html  
    corbetw2mat                             html  
    distee                                  html  
    disteg                                  html  
    expr-data                               html  
    f2cross                                 html  
    find.gene.pseudomarker                  html  
    findCommonID                            html  
    fscale                                  html  
    genepos                                 html  
    lineupversion                           html  
    omitdiag                                html  
    plot.lineupdist                         html  
    plot2dist                               html  
    plotEGclass                             html  
    pmap                                    html  
    pulldiag                                html  
    subset.lineupdist                       html  
    summary.lineupdist                      html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lineup)