* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lidR’ ...
** package ‘lidR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpokIwbo/R.INSTALL66de464b17686/lidR/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c C_Gatziolis2019.cpp -o C_Gatziolis2019.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c C_chm_prep.cpp -o C_chm_prep.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c C_dalponte2016.cpp -o C_dalponte2016.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c C_delaunay.cpp -o C_delaunay.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c LAS.cpp -o LAS.o
LAS.cpp: In member function ‘void LAS::filter_local_maxima(Rcpp::NumericVector, double, bool)’:
LAS.cpp:387:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
387 | for (int i = 0 ; i < npoints ; i++) { if (Z[i] < min_height) state[i] = NLM; }
| ~~^~~~~~~~~
LAS.cpp:375:8: warning: unused variable ‘UKN’ [-Wunused-variable]
375 | char UKN = 0;
| ^~~
LAS.cpp:377:8: warning: unused variable ‘LMX’ [-Wunused-variable]
377 | char LMX = 2;
| ^~~
LAS.cpp: In member function ‘void LAS::filter_local_maxima(Rcpp::NumericVector)’:
LAS.cpp:463:10: warning: variable ‘orientation’ set but not used [-Wunused-but-set-variable]
463 | double orientation = 0;
| ^~~~~~~~~~~
LAS.cpp: In member function ‘SEXPREC* LAS::find_polygon_ids(Rcpp::List, bool)’:
LAS.cpp:621:10: warning: unused variable ‘is_in_polygon’ [-Wunused-variable]
621 | bool is_in_polygon = false;
| ^~~~~~~~~~~~~
LAS.cpp: In member function ‘void LAS::filter_isolated_voxel(double, unsigned int)’:
LAS.cpp:784:10: warning: unused variable ‘zmax’ [-Wunused-variable]
784 | double zmax = max(Z);
| ^~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c Progress.cpp -o Progress.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppFunction.cpp -o RcppFunction.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c UnitTests.cpp -o UnitTests.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c altrep.cpp -o altrep.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c convaveman.cpp -o convaveman.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -c openmputils.cpp -o openmputils.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lidR.so C_Gatziolis2019.o C_chm_prep.o C_dalponte2016.o C_delaunay.o LAS.o Progress.o RcppExports.o RcppFunction.o UnitTests.o altrep.o convaveman.o openmputils.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpokIwbo/R.INSTALL66de464b17686/lidR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpokIwbo/R.INSTALL66de464b17686/lidR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpokIwbo/R.INSTALL66de464b17686/lidR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lidR/00new/lidR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘lidR’
finding HTML links ... done
Extract html
LAS-class html
LAScatalog-class html
LASheader-class html
LASheader html
add_attribute html
aggregate html
as html
asprs html
catalog_apply html
catalog_boundaries html
catalog_retile html
catalog_subset html
classify html
clip html
decimate_points html
deprecated html
dsm_pitfree html
dsm_point2raster html
dsm_tin html
dtm_idw html
dtm_kriging html
dtm_tin html
engine html
engine_options html
filters html
gnd_csf html
gnd_mcc html
gnd_pmf html
identify html
interpret_waveform html
is html
itd_lmf html
itd_manual html
its_dalponte2016 html
its_li2012 html
its_silva2016 html
its_watershed html
las_check html
las_compression html
las_utilities html
lidR-LAScatalog-drivers html
lidR-package html
lidR-parallelism html
lidR-spatial-index html
locate_trees html
merge_spatial html
noise_ivf html
noise_sor html
normalize html
nstdmetrics html
old_spatial_packages html
pitfill_stonge2008 html
plot html
plot.lasmetrics3d html
plot_3d html
plugins html
point_metrics html
range_correction html
rasterize html
readLAS html
readLAScatalog html
readLASheader html
sample_homogenize html
sample_maxima html
sample_per_voxel html
sample_random html
segment html
set_lidr_threads html
shape_detection html
smooth_height html
snag_wing2015 html
st_area html
st_bbox html
st_coordinates html
st_crs html
st_hull html
st_transform html
stdmetrics html
tools html
track_sensor html
track_sensor_gatziolis2019 html
track_sensor_roussel2020 html
voxelize_points html
writeLAS html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lidR)