* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lefko3’ ...
** package ‘lefko3’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb93Duc/R.INSTALLc1252e5c2bc5/lefko3/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DataManagement.cpp -o DataManagement.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ErrorChecks.cpp -o ErrorChecks.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ExtraFunctions.cpp -o ExtraFunctions.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Mats2.cpp -o Mats2.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c MatsNProj.cpp -o MatsNProj.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ModelSelection.cpp -o ModelSelection.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PopChar.cpp -o PopChar.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PopDyn2.cpp -o PopDyn2.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include/ -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lefko3.so DataManagement.o ErrorChecks.o ExtraFunctions.o Mats2.o MatsNProj.o ModelSelection.o PopChar.o PopDyn2.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb93Duc/R.INSTALLc1252e5c2bc5/lefko3/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpb93Duc/R.INSTALLc1252e5c2bc5/lefko3/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpb93Duc/R.INSTALLc1252e5c2bc5/lefko3/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lefko3/00new/lefko3/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘lefko3’
    finding HTML links ... done
    actualstage3                            html  
    add_lM                                  html  
    add_stage                               html  
    aflefko2                                html  
    anthyllis                               html  
    append_lP                               html  
    arlefko2                                html  
    beverton3                               html  
    cond_diff                               html  
    cond_hmpm                               html  
    create_lM                               html  
    create_pm                               html  
    cypdata                                 html  
    cypvert                                 html  
    delete_lM                               html  
    density_input                           html  
    density_vr                              html  
    diff_lM                                 html  
    edit_lM                                 html  
    elasticity3                             html  
    elasticity3.dgCMatrix                   html  
    elasticity3.lefkoMat                    html  
    elasticity3.list                        html  
    elasticity3.matrix                      html  
    f_projection3                           html  
    flefko2                                 html  
    flefko3                                 html  
    fleslie                                 html  
    hfv_qc                                  html  
    hist_null                               html  
    historicalize3                          html  
    image3                                  html  
    image3.dgCMatrix                        html  
    image3.lefkoElas                        html  
    image3.lefkoMat                         html  
    image3.lefkoSens                        html  
    image3.list                             html  
    image3.matrix                           html  
    lambda3                                 html  
    lathyrus                                html  
    lefko3-package                          html  
    lmean                                   html  
    logistic3                               html  
    ltre3                                   html  
    markov_run                              html  
    matrix_interp                           html  
    modelsearch                             html  
    mpm_create                              html  
    overwrite                               html  
    plot.lefkoProj                          html  
    projection3                             html  
    pyrola                                  html  
    repvalue3                               html  
    repvalue3.dgCMatrix                     html  
    repvalue3.lefkoMat                      html  
    repvalue3.list                          html  
    repvalue3.matrix                        html  
    ricker3                                 html  
    rlefko2                                 html  
    rlefko3                                 html  
    rleslie                                 html  
    sensitivity3                            html  
    sensitivity3.dgCMatrix                  html  
    sensitivity3.lefkoMat                   html  
    sensitivity3.list                       html  
    sensitivity3.matrix                     html  
    sf_create                               html  
    sf_distrib                              html  
    sf_skeleton                             html  
    slambda3                                html  
    stablestage3                            html  
    stablestage3.dgCMatrix                  html  
    stablestage3.lefkoMat                   html  
    stablestage3.list                       html  
    stablestage3.matrix                     html  
    start_input                             html  
    subset_lM                               html  
    summary.lefkoCondMat                    html  
    summary.lefkoElas                       html  
    summary.lefkoLTRE                       html  
    summary.lefkoMat                        html  
    summary.lefkoMod                        html  
    summary.lefkoProj                       html  
    summary_hfv                             html  
    supplemental                            html  
    usher3                                  html  
    verticalize3                            html  
    vrm_import                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lefko3)