* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘lefko3’ ...
** package ‘lefko3’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcWzOhS/R.INSTALL281edc515ad047/lefko3/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c DataManagement.cpp -o DataManagement.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ErrorChecks.cpp -o ErrorChecks.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ExtraFunctions.cpp -o ExtraFunctions.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c Mats2.cpp -o Mats2.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c MatsNProj.cpp -o MatsNProj.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c ModelSelection.cpp -o ModelSelection.o
In file included from ../inst/include/LefkoUtils.h:7,
from ModelSelection.cpp:2:
../inst/include/basic_funcs/main_utils.h: In function ‘Rcpp::List LefkoUtils::modelextract(Rcpp::RObject, const Rcpp::DataFrame&, const Rcpp::CharacterVector&, const Rcpp::CharacterVector&, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, Rcpp::RObject, bool)’:
../inst/include/basic_funcs/main_utils.h:3803:21: note: variable tracking size limit exceeded with ‘-fvar-tracking-assignments’, retrying without
3803 | inline Rcpp::List modelextract(RObject object, const DataFrame& paramnames,
| ^~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c PopChar.cpp -o PopChar.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c PopDyn2.cpp -o PopDyn2.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lefko3.so DataManagement.o ErrorChecks.o ExtraFunctions.o Mats2.o MatsNProj.o ModelSelection.o PopChar.o PopDyn2.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcWzOhS/R.INSTALL281edc515ad047/lefko3/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcWzOhS/R.INSTALL281edc515ad047/lefko3/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcWzOhS/R.INSTALL281edc515ad047/lefko3/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lefko3/00new/lefko3/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘lefko3’
finding HTML links ... done
actualstage3 html
add_lM html
add_stage html
aflefko2 html
anthyllis html
append_lP html
arlefko2 html
beverton3 html
cond_diff html
cond_hmpm html
create_lM html
create_pm html
cypdata html
cypvert html
delete_lM html
density_input html
density_vr html
diff_lM html
edit_lM html
elasticity3 html
elasticity3.dgCMatrix html
elasticity3.lefkoMat html
elasticity3.list html
elasticity3.matrix html
f_projection3 html
flefko2 html
flefko3 html
fleslie html
hfv_qc html
hist_null html
historicalize3 html
image3 html
image3.dgCMatrix html
image3.lefkoElas html
image3.lefkoMat html
image3.lefkoSens html
image3.list html
image3.matrix html
lambda3 html
lathyrus html
lefko3-package html
lmean html
logistic3 html
ltre3 html
markov_run html
matrix_interp html
miniMod html
modelsearch html
mpm_create html
overwrite html
plot.lefkoProj html
projection3 html
pyrola html
repvalue3 html
repvalue3.dgCMatrix html
repvalue3.lefkoMat html
repvalue3.list html
repvalue3.matrix html
ricker3 html
rlefko2 html
rlefko3 html
rleslie html
sensitivity3 html
sensitivity3.dgCMatrix html
sensitivity3.lefkoMat html
sensitivity3.list html
sensitivity3.matrix html
sf_create html
sf_distrib html
sf_skeleton html
slambda3 html
stablestage3 html
stablestage3.dgCMatrix html
stablestage3.lefkoMat html
stablestage3.list html
stablestage3.matrix html
start_input html
subset_lM html
summary.lefkoCondMat html
summary.lefkoElas html
summary.lefkoLTRE html
summary.lefkoMat html
summary.lefkoMod html
summary.lefkoProj html
summary_hfv html
supplemental html
usher3 html
verticalize3 html
vrm_import html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lefko3)