* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘karyotapR’ ...
** package ‘karyotapR’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘karyotapR’
    finding HTML links ... done
    PCAKneePlot                             html  
    TapestriExperiment-class                html  
    assayBoxPlot                            html  
    assayHeatmap                            html  
    calcCopyNumber                          html  
    calcGMMCopyNumber                       html  
    calcNormCounts                          html  
    calcSmoothCopyNumber                    html  
    callSampleLables                        html  
    corner                                  html  
    countBarcodedReads                      html  
    createTapestriExperiment                html  
    getChrOrder                             html  
    getCytobands                            html  
    getGMMBoundaries                        html  
    getTidyData                             html  
    karyotapR-package                       html  
    moveNonGenomeProbes                     html  
    newTapestriExperimentExample            html  
    plotCopyNumberGMM                       html  
    reducedDimPlot                          html  
    runClustering                           html  
    runPCA                                  html  
    runUMAP                                 html  
    slotGettersSetters                      html  
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (karyotapR)