* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘itsdm’ ...
** this is package ‘itsdm’ version ‘0.2.1’
** package ‘itsdm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘itsdm’
finding HTML links ... done
cmcc_bioclim html
finding level-2 HTML links ... done
Rd warning: cmcc_bioclim.Rd:10: missing link ‘sf’
Rd warning: cmcc_bioclim.Rd:12: missing link ‘sf’
Rd warning: cmcc_bioclim.Rd:13: missing link ‘sfc’
convert_to_pa html
detect_envi_change html
Rd warning: detect_envi_change.Rd:33: missing link ‘st_as_stars’
Rd warning: detect_envi_change.Rd:34: missing link ‘read_stars’
Rd warning: detect_envi_change.Rd:45: missing link ‘explain’
Rd warning: detect_envi_change.Rd:50: missing link ‘explain’
Rd warning: detect_envi_change.Rd:67: missing link ‘geom_smooth’
Rd warning: detect_envi_change.Rd:72: missing link ‘geom_smooth’
dim_reduce html
Rd warning: dim_reduce.Rd:29: missing link ‘sf’
Rd warning: dim_reduce.Rd:31: missing link ‘sf’
Rd warning: dim_reduce.Rd:31: missing link ‘sfc’
evaluate_po html
format_observation html
future_cmcc_bioclim html
Rd warning: future_cmcc_bioclim.Rd:18: missing link ‘sf’
Rd warning: future_cmcc_bioclim.Rd:20: missing link ‘sf’
Rd warning: future_cmcc_bioclim.Rd:20: missing link ‘sfc’
future_worldclim2 html
Rd warning: future_worldclim2.Rd:38: missing link ‘sf’
Rd warning: future_worldclim2.Rd:40: missing link ‘sf’
Rd warning: future_worldclim2.Rd:40: missing link ‘sfc’
independent_response html
Rd warning: independent_response.Rd:19: missing link ‘st_as_stars’
Rd warning: independent_response.Rd:20: missing link ‘read_stars’
isotree_po html
Rd warning: isotree_po.Rd:77: missing link ‘isolation.forest’
Rd warning: isotree_po.Rd:161: missing link ‘isolation.forest’
Rd warning: isotree_po.Rd:163: missing link ‘isolation.forest’
Rd warning: isotree_po.Rd:99: missing link ‘isolation.forest’
Rd warning: isotree_po.Rd:103: missing link ‘sf’
Rd warning: isotree_po.Rd:105: missing link ‘sf’
Rd warning: isotree_po.Rd:107: missing link ‘sf’
Rd warning: isotree_po.Rd:109: missing link ‘sf’
Rd warning: isotree_po.Rd:286: missing link ‘isolation.forest’
itsdm-package html
mainland_africa html
Rd warning: mainland_africa.Rd:8: missing link ‘sf’
Rd warning: mainland_africa.Rd:14: missing link ‘sfc’
marginal_response html
Rd warning: marginal_response.Rd:18: missing link ‘st_as_stars’
Rd warning: marginal_response.Rd:19: missing link ‘read_stars’
occ_virtual_species html
plot.EnviChange html
plot.EnvironmentalOutlier html
Rd warning: plot.EnvironmentalOutlier.Rd:16: missing link ‘geom_sf’
plot.IndependentResponse html
plot.MarginalResponse html
plot.PAConversion html
plot.POEvaluation html
plot.SHAPSpatial html
plot.ShapDependence html
Rd warning: plot.ShapDependence.Rd:44: missing link ‘geom_smooth’
plot.SpatialResponse html
plot.VariableAnalysis html
plot.VariableContribution html
print.EnviChange html
print.EnvironmentalOutlier html
print.FormatOccurrence html
print.PAConversion html
print.POEvaluation html
print.POIsotree html
print.ReducedImageStack html
print.VariableAnalysis html
probability html
shap_dependence html
Rd warning: shap_dependence.Rd:29: missing link ‘st_as_stars’
Rd warning: shap_dependence.Rd:30: missing link ‘read_stars’
Rd warning: shap_dependence.Rd:41: missing link ‘explain’
Rd warning: shap_dependence.Rd:174: missing link ‘explain’
shap_spatial_response html
Rd warning: shap_spatial_response.Rd:28: missing link ‘st_as_stars’
Rd warning: shap_spatial_response.Rd:29: missing link ‘read_stars’
Rd warning: shap_spatial_response.Rd:38: missing link ‘explain’
Rd warning: shap_spatial_response.Rd:43: missing link ‘explain’
spatial_response html
Rd warning: spatial_response.Rd:26: missing link ‘st_as_stars’
Rd warning: spatial_response.Rd:27: missing link ‘read_stars’
Rd warning: spatial_response.Rd:33: missing link ‘explain’
Rd warning: spatial_response.Rd:38: missing link ‘explain’
suspicious_env_outliers html
Rd warning: suspicious_env_outliers.Rd:51: missing link ‘outlier.tree’
Rd warning: suspicious_env_outliers.Rd:22: missing link ‘crs’
Rd warning: suspicious_env_outliers.Rd:23: missing link ‘crs’
Rd warning: suspicious_env_outliers.Rd:34: missing link ‘outlier.tree’
Rd warning: suspicious_env_outliers.Rd:55: missing link ‘outlier.tree’
Rd warning: suspicious_env_outliers.Rd:43: missing link ‘sf’
Rd warning: suspicious_env_outliers.Rd:45: missing link ‘outlier.tree’
Rd warning: suspicious_env_outliers.Rd:46: missing link ‘sf’
Rd warning: suspicious_env_outliers.Rd:86: missing link ‘outlier.tree’
variable_analysis html
Rd warning: variable_analysis.Rd:30: missing link ‘st_as_stars’
Rd warning: variable_analysis.Rd:31: missing link ‘read_stars’
Rd warning: variable_analysis.Rd:35: missing link ‘explain’
Rd warning: variable_analysis.Rd:154: missing link ‘explain’
variable_contrib html
Rd warning: variable_contrib.Rd:31: missing link ‘explain’
Rd warning: variable_contrib.Rd:118: missing link ‘explain’
worldclim2 html
Rd warning: worldclim2.Rd:25: missing link ‘sf’
Rd warning: worldclim2.Rd:26: missing link ‘sf’
Rd warning: worldclim2.Rd:27: missing link ‘sfc’
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (itsdm)