* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘ips’ ... ** package ‘ips’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘ips’ finding HTML links ... done DNAbin2index html finding level-2 HTML links ... done EmptyCells html aliscore html beastLog html blastn html code.simple.gaps html collapseUnsupportedEdges html combMyTree html del.miss html deleteGaps html descendants html fixNodes html forceEqualTipHeights html gblocks html index2DNAbin html ips-internal html ips-package html ips.16S html ips.28S html ips.cox1 html ips.tree html mafft html mafft.merge html mrbayes html mrbayes.lset html mrbayes.mcmc html mrbayes.prset html multistate html neighboringPairs html ntip html oi html partitionfinder html pathd8 html phylo2mafft html phylo2mst html pis html prank html raxml html raxml.partitions html rbeauti html rc html read html read.beast html read.beast.table html sister html splitIntoClades html terminalSisters html tipHeights html traitRate html trimEnds html unlistFirstLevel html write.fas html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ips)