* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘hsrecombi’ ...
** this is package ‘hsrecombi’ version ‘1.0.1’
** package ‘hsrecombi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpsv88M2/R.INSTALL3f2bab69bf2a5d/hsrecombi/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LDHSc.cpp -o LDHSc.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o hsrecombi.so LDHSc.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpsv88M2/R.INSTALL3f2bab69bf2a5d/hsrecombi/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpsv88M2/R.INSTALL3f2bab69bf2a5d/hsrecombi/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpsv88M2/R.INSTALL3f2bab69bf2a5d/hsrecombi/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-hsrecombi/00new/hsrecombi/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘hsrecombi’
    finding HTML links ... done
    LDHScpp                                 html  
    bestmapfun                              html  
    checkCandidates                         html  
    countNumbers                            html  
    daughterSire                            html  
    editraw                                 html  
    felsenstein                             html  
    geneticPosition                         html  
    genotype.chr                            html  
    haldane                                 html  
    hapSire                                 html  
    hsrecombi                               html  
    karlin                                  html  
    kosambi                                 html  
    loglikfun                               html  
    makehap                                 html  
    makehaplist                             html  
    makehappm                               html  
    map.chr                                 html  
    rao-inverse                             html  
    rao                                     html  
    startvalue                              html  
    targetregion                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hsrecombi)